Clone UFO09804 Report

Search the DGRC for UFO09804

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:98
Well:4
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO09804.5prime Sequence

882 bp (881 high quality bases) assembled on 2011-10-17

> UFO09804.5prime
CAGTCGACATGTTAAATTCACACAACACAAACCACAATAACAACAGCGCC
AGCAACAGCAACTACAACAAAGGCCACAAAATGCATTTGAAAAGTGCAAC
GGCAAAAGCAACAATAATGAAACATAAGTTAAGCAAATTTTACGGATACG
GTTGGATGCAAGTCTTCCTACTACTTACAGTCCTCGTGATTGGTAATCAA
AGTGCCTGGCAGGAGAATATACGACCAAAACTCTACGTTGAATTAGGTCC
CGAAGATGTACTGAAGTTTGTGGGAAACGAAAGTGTTGTGGATCACTTCA
AGCTCGTCACCAAGGATGGCAACAGTCTGCTCATCGGTGCCAGAAACACG
GTTTTTAATTTAAGCATACACGATCTCGTCGAGCAGCAGCGATTGGTCTG
GACATCGCCGGAGGATGATACCAAAATGTGTCTCGTCAAGGGCAAGGATG
AGGAGGCCTGCCAGAACTACATCCGCATCATGGTGGTGCCATCGCCGGGT
CGCCTTTTCGTTTGTGGCACCAACTCGTTCCGGCCCATGTGCAACACGTA
TATCATTAGTGACAGCAACTACACGCTGGAGGCCACGAAAGAACGGACAG
GCGGTGTGCCCCTACGATCCGCGTCACAACTCCACCTCTGTGCTGGCCGG
TAAGTGTGCTAAAATTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAATTCTCAACCAATA
AAAAACGCCCGGGCGGCAACGGAGCGTTCTGAACCAAATCCAGAATGGGA
GTTCCTGGAGGTCATTACTGGTATCTATCAAC

UFO09804.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sema-1a-RF 7980 CG18405-RF 1397..2036 9..649 3180 99.8 Plus
Sema-1a-RE 9624 CG18405-RE 1077..1716 9..649 3180 99.8 Plus
Sema-1a-RD 9706 CG18405-RD 1283..1922 9..649 3180 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8564059..8564298 9..248 1200 100 Plus
2L 23513712 2L 8645025..8645239 451..666 1030 99.5 Plus
2L 23513712 2L 8640584..8640696 341..453 565 100 Plus
2L 23513712 2L 8631025..8631123 245..343 495 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:16:24 has no hits.

UFO09804.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:43 Download gff for UFO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
Sema-1a-RE 1207..1858 1..653 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:34 Download gff for UFO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
Sema-1a-RD 1275..1926 1..653 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:55 Download gff for UFO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
Sema-1a-RD 1275..1926 1..653 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:55 Download gff for UFO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8564051..8564296 1..246 98 -> Plus
2L 8631027..8631123 247..343 100 -> Plus
2L 8640587..8640695 344..452 100 -> Plus
2L 8645027..8645246 453..676 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:34 Download gff for UFO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8564051..8564296 1..246 98 -> Plus
arm_2L 8631027..8631123 247..343 100 -> Plus
arm_2L 8640587..8640695 344..452 100 -> Plus
arm_2L 8645027..8645246 453..676 97   Plus