UFO09807.5prime Sequence
1121 bp (924 high quality bases) assembled on 2011-10-17
> UFO09807.5prime
CAGTCGACATGTTGCGTAACAGGCTGATAGATGGAGTCAGGCGAATAAAA
CCCATACTTTGCGGGGGGCAATCCCTGCGATCCCTTGCCAATGGCGCGAC
TTCAAAGCTGACAACCATAGAGGTCGATGATAGGAGTGGGATTGCCACTC
TGTCAATGAACCTGCCACCGGTGAACACTTTGACCATGGAGCTGATGCAC
GACCTCATCGATTCAATCAATCAGATTGAGAGCAACAAGAGCCGCGGTCT
CATCCTGACTTCAAGCAATGACAAGGTCTTCTCCGCCGGCCTCGATCTCA
ACGAGATGCTGAATCCGGATGTGGAGCGACTGCGATTATTCTGGACTCGG
TTCCAGGATTTGTGGCTGGCCCTCCATCTTTGTGGCCTTCCCACAGCAGC
GGCAATCAATGGACACTCACCTGCCGCAGGCTGTGTCCTGGCAACCGCCT
GTGAGTATCGCGTGATGTTGCCGAATCTCTTTATCGGTATACATGCCACC
CGGTTTAGCTTCGTCATCTCGAAGTGGATGATGAACTCGTACCAGAGCGT
TCTACCCCGCAGAATTGTGGAGCGAGCGCTGAATCAAGGTAAGCTCTTCG
CCAGCCAGGAAGCTCTGGATGTGGGCCTTGTGGACGAGATCGCGTGTAGC
AAAGAGGAAGCGCTCTCCAAGTGCGCAGCCTTCATAGCCACCCTTTGACA
AGACCAACCCGGTGGCCAGGTGCCTAACCAAGCGAATGTGTCGGGAGCCA
GATGTGCGGGAGCTGCTTCAGGATAGAGCTGCGGATCTGAAAGAGTGCGT
CGACTATGTCACTACTCCGCTATTCAGGAGGGACTCTGTGCCACTTGGAG
GGTCCTCAAGAAGAAGAAAAGCAGCTTTCTAGACCATCGTTTGGCGCGCC
GGGCCCAGGTAAGTGGTCATAATCATAATCAAATCATAATCATAATCCAC
ACCTAGCCTAGGAGAATCCTGGTCATGACTAGGTGCTTTGGATTCCTCAC
CCATAAAAAACGCCCCCGGCGGCCAACGACGTTTCTGAACAATTCGAAAT
GGAATCTTGAAGTTATTTACTGGATCTAATCAACAGGAATTCAAGCGGAG
CCTCGAATATTCAATTACGCC
UFO09807.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4592-RB | 1105 | CG4592-RB | 108..969 | 8..870 | 4185 | 99.3 | Plus |
| CG4592-RA | 1011 | CG4592-RA | 108..969 | 8..870 | 4185 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9922266..9922710 | 411..854 | 2065 | 99.1 | Plus |
| 2L | 23513712 | 2L | 9921740..9921995 | 8..263 | 1280 | 100 | Plus |
| 2L | 23513712 | 2L | 9922064..9922211 | 264..411 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:16:38 has no hits.
UFO09807.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:44 Download gff for
UFO09807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4592-RA | 97..972 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:44 Download gff for
UFO09807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4592-RA | 103..978 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:00 Download gff for
UFO09807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4592-RA | 103..978 | 1..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:00 Download gff for
UFO09807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9921735..9921995 | 1..263 | 98 | -> | Plus |
| 2L | 9922064..9922210 | 264..410 | 100 | -> | Plus |
| 2L | 9922266..9922733 | 411..880 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:44 Download gff for
UFO09807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9921735..9921995 | 1..263 | 98 | -> | Plus |
| arm_2L | 9922064..9922210 | 264..410 | 100 | -> | Plus |
| arm_2L | 9922266..9922733 | 411..880 | 97 | == | Plus |
