UFO09809.5prime Sequence
1086 bp (976 high quality bases) assembled on 2011-10-17
> UFO09809.5prime
CAGTCGACATGTCGCTGGTGGCAGATTATAGCGACTCCTCCGAATCCGAT
GAAGACAGCAGTGGCCAATTTTCCGAAGACGGGGAAACAAAGAGTGCGGC
ACCAGCCAAAAATGAGAAGACTCCTCCTCCCAAGTTGCCCAGTGCTAGCC
AAGCTTTTTCCCAAGGAGCTGGAAAGGGAGATGTGTTTAACAATCCCTTC
CTGGAGGCCGAGCTGCATAAAACCGCGTCGCTGGAGCGGCACGTGAAGAT
GGTCGACAACGACGCGCACCAAAAGTTGAAGAATGGCCGTAAGATTTGCT
GGAACTTTAGAAGGGGACGCTGCCGCTTTGGCACCAGTTGCCAGTATGCT
CACGATTCCGACTTGTCGGTGGATGAGGCGGCGGAGAAGAGTGCATTACC
GGATCAATCAGTGCCTGTGGTCGTAGAAGCTGCACCGGGTAATTTCAACA
GGCGTAAGCGCCCGGGTCTGGGCGATGCTCTGGAGCCGGGCAAACGGGTT
ATGAAGTCCTACAAACAGCAAAATCCGCAAAATCCATTTGCCCGGCGTGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCAACAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTAATAATATTTGCCCATGTGAAAACGGGGCGAAGAAGTGT
CCATATTGCCACGTTTAAATCAAACTGTGAAACTCCACCCAGGATTGCTG
AAACGAAAACATATCCTCATAACCCTAGAATAGCAGCTTCACCGTAACCC
GCCCAATCTGCAATATGTGTTAGAACTGCGATCGTC
UFO09809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42382-RA | 885 | CG42382-RA | 46..585 | 9..548 | 2700 | 100 | Plus |
| Rad51C-RB | 1918 | CG2412-RB | 1114..1569 | 548..93 | 2280 | 100 | Minus |
| Rad51C-RB | 1918 | CG2412-RB | 1626..1711 | 94..9 | 430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9166866..9167321 | 548..93 | 2280 | 100 | Minus |
| 2R | 25286936 | 2R | 9167378..9167463 | 94..9 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:16:47 has no hits.
UFO09809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:45 Download gff for
UFO09809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42382-RA | 56..595 | 9..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:56 Download gff for
UFO09809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42382-RA | 46..585 | 9..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:02 Download gff for
UFO09809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42382-RA | 46..585 | 9..548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:02 Download gff for
UFO09809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9166866..9167319 | 95..548 | 100 | <- | Minus |
| 2R | 9167378..9167463 | 9..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:56 Download gff for
UFO09809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5054371..5054824 | 95..548 | 100 | <- | Minus |
| arm_2R | 5054883..5054968 | 9..94 | 100 | | Minus |
