UFO09812.5prime Sequence
1086 bp (968 high quality bases) assembled on 2011-10-17
> UFO09812.5prime
CAGTCGACATGCTTCTGCGGATGACCCAGTTTCTCTGCCTTGCGGCACTC
GTTTTGCTAAGTCTTATGCAACTTACGCAGGCAGTAGCCACTCCCAATAA
TAATAATAATAATAATAACAATATTAAACCGAAGGCTGTGGTTCAGGTGC
AACCTGGAAATCCATCGGGAAACAAGCCTGCAGTTGCCACAACTACAATC
AAACCACAGAGACTGGTACCAGATCCCAAATGCCTGCAGCCCTTGGACGT
TGGTCCATGCCGCATGAGCCTAGAAAGGTTCTACTACAACAAGGATTCAA
AAGCTTGCGAGACCTTCAAGTACGGAGGATGTCGAGGCAATGACAATCGT
TGGGGATTCCGACAAACTTGTGAGGAGGCTTGTATTCCCAAAAAGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCC
ATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGC
TGAGACGAAAAACATATTTCTCAATAAACCTTTAAGGAAAAAGGCCAGGT
TTTCACCGTTAACACGCAACATCTTGCGAATATTATGGTGTAGAACTGCC
GGAAATCGTCGTGGTATTCACTCCAGAGCGATGAACGTTTCAGTTTGCTC
ATTGAAACGTGGTTAACAGGTGACCTATTCCATATTCACAGCTCACGTCT
TTCATGCATCGATCCGGGATGACATCATCAGCGGCC
UFO09812.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10031-RA | 577 | CG10031-RA | 53..439 | 9..395 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3698827..3699040 | 222..9 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 3698589..3698763 | 395..221 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:17:05 has no hits.
UFO09812.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:47 Download gff for
UFO09812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10031-RA | 46..438 | 1..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:07 Download gff for
UFO09812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10031-RA | 47..439 | 1..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:09 Download gff for
UFO09812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10031-RA | 47..439 | 1..395 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:09 Download gff for
UFO09812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3698589..3698761 | 223..395 | 100 | <- | Minus |
| 2L | 3698827..3699046 | 1..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:07 Download gff for
UFO09812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3698589..3698761 | 223..395 | 100 | <- | Minus |
| arm_2L | 3698827..3699046 | 1..222 | 98 | | Minus |
