UFO09813.5prime Sequence
1091 bp (989 high quality bases) assembled on 2011-10-17
> UFO09813.5prime
CAGTCGACATGGACTTTGATGAGTTCCGTGAATTTGGCCATGCCTCCATC
GAGTTCCTTATCAACTATCTGAGCGGCATACGTGAGAGGGATGTCCTGCC
CAGCACGGCTCCATATGCGGTGATCAATCAGCTGCCCAAGGAGATTCCCG
AGCAGCCCGATCATTGGCGCGAGGTCCTCAAGGATCTGGAGAACATCATC
CTGCCGGGTCTGACCCACTGGCAATCGCCCTACTTCAATGCCTTCTATCC
GTCATCCTCGTCGGCGGGCTCCATCATCGGTGAGCTGCTGATCGCGGGCA
TCGGAGTCCTTGGATTCAGTTGGATCTGCAGTCCCGCCTGCACAGAACTG
GAGGTGGTGGTCATGGACTGGCTGGCCAAGTTCCTGAAGCTGCCCGCACA
CTTCCAGCACGCCAGCGATGGACCAGGAGGCGGGGTGATCCAGGGATCAG
CTAGCGAGGCTGTGTTGGTGGCTGTCCTAGCTGCCAGGGAACAAGCTGTG
GCCAACTACAGGGAATCGCATCCGGAGCTGAGCGAAAGTGAGGTGCGTGG
CCGCTTGGTGGCCTACTCCTCGGACCAGAGTAACAGCTGCATTGAGAAGG
CTGGAGTCCTGGCTGCCATGCCGATTCGATTGCTGCCGGCTGGAGAGGAT
TTCGTACTTAGAGGCGATACACTGAGAGGAGCCATCGAGGAGGACGTGGC
AGCGGGCAGGATTCCGGTGATCTGCGTTGCCACTCTGGGCACCACGGGCA
CTTGTGCCTATGACGACATTGAATCCCTGTCCGCTGTCTGCGAGGAATTC
AGGGTGTGGCTCCATGTTGATGCCGCGTATGCCGGTGGAGCCTTTGCTCT
GGAGGAATGTTCGGATTTGCGAAAGGGATTGGATCGCGTGGACTCGCTAA
ACTTCAACCTGCACAGTTCATGCTGGTCAACTTCGATTGCCTCGGCCATG
TGGCTAAAGATGCCACAAGTGGTTCGACAGGCTTCAATGGTGGATCGCAT
TCTACTGAAGCCACAAGCACGAGGTCAGTCGCAATCCTGACTTCGGTCAT
GGCCAATCCCCTTGGGTTCGCGCCTCGACCTTAAGGCTGAT
UFO09813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RB | 1749 | CG10501-RB | 117..1179 | 8..1067 | 4905 | 98.1 | Plus |
| amd-RA | 1792 | CG10501-RA | 348..1222 | 196..1067 | 3395 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19112793..19113427 | 323..957 | 3065 | 99.5 | Plus |
| 2L | 23513712 | 2L | 19110410..19110646 | 87..323 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 19110270..19110351 | 8..89 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:17:24 has no hits.
UFO09813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:48 Download gff for
UFO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RB | 106..1061 | 1..957 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:15 Download gff for
UFO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RB | 111..1182 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:17 Download gff for
UFO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RB | 111..1182 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:17 Download gff for
UFO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19110412..19110646 | 89..323 | 100 | -> | Plus |
| 2L | 19110264..19110350 | 1..88 | 96 | -> | Plus |
| 2L | 19112794..19113427 | 324..957 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:15 Download gff for
UFO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19110264..19110350 | 1..88 | 96 | -> | Plus |
| arm_2L | 19110412..19110646 | 89..323 | 100 | -> | Plus |
| arm_2L | 19112794..19113427 | 324..957 | 99 | == | Plus |
