UFO09814.5prime Sequence
1144 bp (1005 high quality bases) assembled on 2011-10-17
> UFO09814.5prime
CAGTCGACATGGAATATGTGCAGGAAAATAGAGGATTTACCAATATCGGC
AATAGCTTTGGCTTCGTATGCAGAATTATAGAAAAGCAATGCGGAATTCA
ACAATTGGGAGCTCTTGAAAAATACGAATTTGCCGAGCTACTGAAGATTC
TGAATGGCACAGAAAAGTTTCTGGCCTCCAAGTTCTTCTGCCAACTGCCA
GCGAATGTCGGCAGTTTTCGAGTTCTCCGACAGCTACAGGAACTTCGCAT
CCTGACGGCCACGCAGTACATCTTTAGCAAGGAGGACTCCGATCAACTGC
AGGTGGACCTGATCATATTCCTGGAATCTGAGTTCGAACTTCTCGCAAAT
GTTTTCTTTTCAGCGGCTTACGATGCTGAATCTGCGTTGAAGCTAACCTT
GATACTGACAAGCGCTTTGGGGAATCTCTATTCCGGCCTCGTTGGCAATC
CCAAGATATGCAGCTTGGCATATGTGGAGTTCTTGTGCAAAACCCTGCCA
GATGAAGCGCTAAATGTTTGCATGAACATGCATTTAAGTACCCTGTTGGA
TCTTCACCGATCGGAGAATGTAGACGAGGCATTCGCCAGCTTTAGCGCCT
GGATAAATGAGGGCGTCGACGAACTAACCTTTGTAAAGCACCTTTGCGAT
AAGATGTTTGCTAGCCATCAGCAGGCAGCCCTTCAATATCTATTCAAACA
GTCAAACACGGAAAACTTTAATCAGTGGAAGTTCTATCTAATACTTGTGC
AAACTATCGCAAGCGCAGCCAATCCTGAAACCACCGCATACATTAAAAAG
TATCTGAAAAATAGACTTCTGCAAACTGCATCCACGGCTTCCCTGGGATC
CTTGCTTCATTTGCTGCTGACTGCAAAGGGCTGCTTGTGCCTCAACCATG
GATGTTCGTGCTATTCTAGAACAACTATGCGAAGTGGTAACAAGCAGAAC
ATTGGTGAAATGACGTACATATTGGGGCCACGAAAAAGTTTCAGACAATC
CTAAGGCCTCTGGAAGGAGTCTTTAACCATACGAAAAAAAGCTGCAAATA
CCTGGAAGATTCCATTGGTCAATTGCCAATTTCACCTGTGGGGCGGCCTG
TCCAGCCCTACAAAAACTATGCAAGCTTCAATGCACTCACCTTA
UFO09814.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30001-RA | 1327 | CG30001-RA | 75..1170 | 9..1115 | 5060 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9821446..9821687 | 1047..799 | 840 | 94.8 | Minus |
| 2R | 25286936 | 2R | 9821947..9822101 | 653..499 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 9821746..9821892 | 798..652 | 735 | 100 | Minus |
| 2R | 25286936 | 2R | 9822155..9822284 | 501..372 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 9822505..9822616 | 277..166 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 9822347..9822443 | 372..276 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 9822664..9822756 | 167..75 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 9822816..9822881 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:17:34 has no hits.
UFO09814.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:49 Download gff for
UFO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30001-RA | 154..1233 | 9..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:21 Download gff for
UFO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30001-RA | 75..1154 | 9..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:19 Download gff for
UFO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30001-RA | 75..1154 | 9..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:19 Download gff for
UFO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9821947..9822098 | 502..653 | 100 | <- | Minus |
| 2R | 9822155..9822283 | 373..501 | 100 | <- | Minus |
| 2R | 9822347..9822441 | 278..372 | 100 | <- | Minus |
| 2R | 9822505..9822614 | 168..277 | 100 | <- | Minus |
| 2R | 9822664..9822756 | 75..167 | 100 | <- | Minus |
| 2R | 9822816..9822881 | 9..74 | 100 | | Minus |
| 2R | 9821461..9821687 | 799..1032 | 95 | <- | Minus |
| 2R | 9821746..9821890 | 654..798 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:21 Download gff for
UFO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5710010..5710119 | 168..277 | 100 | <- | Minus |
| arm_2R | 5710169..5710261 | 75..167 | 100 | <- | Minus |
| arm_2R | 5710321..5710386 | 9..74 | 100 | | Minus |
| arm_2R | 5709251..5709395 | 654..798 | 100 | <- | Minus |
| arm_2R | 5709452..5709603 | 502..653 | 100 | <- | Minus |
| arm_2R | 5709660..5709788 | 373..501 | 100 | <- | Minus |
| arm_2R | 5708966..5709192 | 799..1032 | 95 | <- | Minus |
| arm_2R | 5709852..5709946 | 278..372 | 100 | <- | Minus |
