UFO09817.5prime Sequence
1098 bp (1007 high quality bases) assembled on 2011-10-17
> UFO09817.5prime
CAGTCGACATGCCTAAGTCGGGTCGCGACGGAGGAGCATCCAAGGACTCC
AAATACGATCTAAGCAAAATCTCAGCTCGCGTGGATCGCGTGAACGTCAG
CGGATTGCTGCGCACCCACAACGACTATGTGATGAGGGCGGCAGATGGCC
TGTTTAAGGCCAGTAACTTCCAGGATCTAATGCTGGAGGCCATGTCCACC
AAATCATATCTGCACGAGCTAGGCATCTTCAAGGATGTGAGCGTGCACAT
CGATGTTAGCCGTGGAGCGGATGCCTCGCCACAGGGATACGAGGTTACCT
TCAAGGGCAACGAAATGTCGCGCATGATGGGTTCGGCGGGCACCGAGATT
GGCCAGAACGAGGGCTCCCTGCGAACGGAGTTGACTATCCCCAATATTCT
GGGACGTGGCGAGAACATCTCACTGCAGGGCAGCTATAGCAGCACCAGGG
CCAATGATCTACAACTGAAGTTCTGGAAACCCTTCTTCCACACACGCTTC
AAGGAAAATCGGCCTGAAATGTCTTTCAGCATTTTTAGGCAAACCGATCG
GTTTGACATAAGTTCATTTCAAACCACCAACATAGGCTATTTGGTGGACT
TCTCGGCGCATACGATGGTTGGAGTGGATTTGACGCACTCGCTGCAGTAT
GAGAACGCCATCAGAGACGTGGGATTGCTAAACAAATCAGTGCCCTTCGC
CATACGCGATCATTGTGGCCCCAAATTGGCCTCTTTGCTGCGCTACTCCG
TGGTCTACGACAATCGGGATGGAAACGTATTCCCCACACGCGGTATTTAC
CTTAAATCAGTTAACGAATACTGCGGATTGGGCGGTAATGTCGCCTACAC
CAGCAGCACTGCCCACGGAGAGTTGAATGTGCCACTGTTTGCCGGTTTGG
TGGCCCAGTTTTGCGCTCGCGTGGCGTCGTTTAAGAGACTAAATACCCAC
CCAGCTGCCCTATTAGCTCGCTATTTTACTGTGTGTCCATTGACACTGAA
AGGATTTAATTGGAGACTGTTCAGTTAGTTTGAAGGCACGCCATGAGCCA
AGTCTTTTCTTGTTGCACGCCGCTCACCTGTGCACCGCTTACCCTTGC
UFO09817.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7639-RB | 1834 | CG7639-RB | 231..1327 | 9..1096 | 4870 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14988935..14989443 | 517..9 | 2545 | 100 | Minus |
| 2R | 25286936 | 2R | 14988319..14988701 | 1009..630 | 1630 | 97.4 | Minus |
| 2R | 25286936 | 2R | 14988762..14988873 | 629..518 | 560 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 24..58 | 556..590 | 112 | 80 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 4882..4916 | 556..590 | 112 | 80 | Plus |
UFO09817.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:50 Download gff for
UFO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7639-RB | 217..1227 | 1..1009 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:31 Download gff for
UFO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7639-RB | 224..1234 | 1..1009 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:27 Download gff for
UFO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7639-RB | 224..1234 | 1..1009 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:27 Download gff for
UFO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14988319..14988701 | 630..1009 | 97 | <- | Minus |
| 2R | 14988762..14988873 | 518..629 | 100 | <- | Minus |
| 2R | 14988935..14989449 | 1..517 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:31 Download gff for
UFO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10875824..10876206 | 630..1009 | 97 | <- | Minus |
| arm_2R | 10876267..10876378 | 518..629 | 100 | <- | Minus |
| arm_2R | 10876440..10876954 | 1..517 | 99 | | Minus |
