UFO09820.5prime Sequence
1094 bp (959 high quality bases) assembled on 2011-10-17
> UFO09820.5prime
CAGTCGACATGAAGTTCCTAGCTCTTTTCGTCACTTTGCTGGTTGTTCTG
GCTTTGGTTAGCGCCCAAAAGAGCCAAAATACAAATCACAACGTCATCGT
CATCGGTGCCAAGAAGCCAGGAGCTGCACCTGCCGCAGCAGCTGCTGCTG
CTCCTGCCGCACCTCCTGCCGCAGCTCCTGCCGCAGCTCCAGCTGCTCCT
GAAGCAGGACTCGCAGATGCTCCAGCCGAAAGTGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA
ACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAA
CACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTG
GTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGG
TGTAACAAGGGTGAACACTATCCCATAATCACAGCTCACCGTCTTTCATT
GCCATACGAAATTCCGGATGAGCATTCATCAAGCGGCAAGAATGTGAATA
AAGGCGGATAAACCTTGTGCTTATTTTTTCTTTACCGGTCTTAAAAGCGT
AATATTCCAAGCTGACGGTCTGTTTATAGGTAACATTGACAACTGAACTG
AATGCTCAAATGTTCTTAACGATGCATTGGGAATTATCAACGTT
UFO09820.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst57Da-RA | 325 | CG9074-RA | 20..248 | 5..233 | 1115 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25831652..25831880 | 233..5 | 1115 | 99.1 | Minus |
Blast to na_te.dros performed 2014-11-27 00:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 802..869 | 123 | 68.1 | Plus |
UFO09820.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:52 Download gff for
UFO09820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst57Da-RA | 411..652 | 1..241 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:41 Download gff for
UFO09820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst57Da-RA | 15..256 | 1..241 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:33 Download gff for
UFO09820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst57Da-RA | 15..256 | 1..241 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:33 Download gff for
UFO09820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25831652..25831881 | 1..233 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:41 Download gff for
UFO09820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21657374..21657603 | 1..233 | 97 | | Minus |
