UFO09837.5prime Sequence
1092 bp (970 high quality bases) assembled on 2011-10-17
> UFO09837.5prime
CAGTCGACATGGTGAGGAAGCACAAAGGAACACTGGCGGTGATCGAGAAG
ATCTACCAGGATATACCCGCATTCTCCGACATCTTCACCGAGGAGAGCTT
CTACATGTTCGCCTTCTGTTTCGTGTGCGCCACCATTCTGGTGGCCTTCA
TTCTCTCCCGGTTCATCACCATCAAGCCCGTCGATTTCGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCAC
CGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCG
TCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAA
AACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTT
TCATTGCCATACGAAATTCCCGGATGAGCATTCATCAGCGGGCAAGAATG
TGAATAAACGCCCGGATAAACTGTGCTTATTTTTCTTTACGGTCTTTAAA
AAGCCGTAATATCCAGCTGACGTCTGATTATAGTACATTGAGCAACTGAC
TGAATTGCTTCAAATGTTCTTACGATGCATGGAAAATCACGTGTATATCA
GTGAATTTTTCTCATTAGCTTCTTAGCTCTGGAAGATCTAAC
UFO09837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33155-RD | 942 | CG33155-RD | 695..874 | 9..188 | 900 | 100 | Plus |
| CG33155-RC | 829 | CG33155-RC | 582..761 | 9..188 | 900 | 100 | Plus |
| CG33155-RA | 725 | CG33155-RA | 478..657 | 9..188 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13955417..13955596 | 9..188 | 900 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 757..824 | 123 | 68.1 | Plus |
UFO09837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:55 Download gff for
UFO09837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33155-RC | 571..762 | 1..194 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:00 Download gff for
UFO09837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33155-RA | 471..662 | 1..194 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:49 Download gff for
UFO09837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33155-RA | 471..662 | 1..194 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:49 Download gff for
UFO09837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13955410..13955596 | 1..188 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:00 Download gff for
UFO09837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9842915..9843101 | 1..188 | 97 | == | Plus |
