UFO09839.5prime Sequence
1101 bp (985 high quality bases) assembled on 2011-10-17
> UFO09839.5prime
CAGTCGACATGGAGGATCAGGGCGACGTGACAGACCAAGCCGCTGGTAAG
CTGAGTAGTTCGAATGCCCAGTGCTCCAGAAACCGATGTGCTAATGATGA
CCCCATTATGGGCAGCCACAGTCAGAGTCGCCAGAACTCGTCCGGCATGC
TGAACATGATGGACGCCAGCTCCTTCAGCATGCCCCCCCCCAATCTGCAC
TCCTCAAAGGTGATCAACCCGAACAAGGCGATATTCACAATCGACGCGAA
CACAGGGCAAATTTTTATAGTGAACAACAAGGCCTGCCAGCTGCTGGGCT
ACACGTCGCAGGAGTTGAGGAACAAGGGATTCTTCGACCTGCTTAACGGC
AAGACAGAGAGCCACATCTCCTCCCTGGCGGAGATGCAGATCGAAGGCGA
TGAGGGCCGGGTCGTCCTGCTAAGTGGAAAGGTCATCGAGATGAAGACCA
AGTCGGGCGGCAAGATCCTGGTCTCTCTCTGGATCCGGCAGATCAGCAGC
GATGGCCGACACATAGCCGTCGCGGAGCCTGTGGAGAGGCATATTTGCCA
CATCAGCACCGATAGATCCGGAGTGATAACATCCGTTGACTCCACCACGG
CCACCATATTCTTTTATGAATCCGTCGAAAGCGTGGTGGGTGTCAGCATT
GTCACCCTTATCCCGTTTATAAAGCTGCCCGATCCGGATAGCCGTGAGAT
CCCCAAGAGCCTGCGGAAGCAGAGAGCTACTGGTCGAACTACGGATAACG
TAAAGTTTCCCCTGTGCTTGCTAATAGCCCTGGACGAGGATGCTTCTGCG
GGGTATTCCCATTCGGGAAAAACCGGTCTAAATATCACCGTCTGGTGTTC
CAGAATCTTAGTGGCCCTGATTGTGGTAGATGACATAGCAACATACTGAT
GTGCAACCAGCCTTTCTCGCTGCTAATGTTCGGATATGGTCAGACAGATA
TGACATGCATATATCGGCGATCTACCCATTTCGCAGACTCTCGCGAGGAG
AAGAGTCGATGTTTCGACACCTCGATACAGTACGACTGAGCGACCGAATT
CCCTCGTCTGACACGACTCTCTGCATCTGCAAGAAGAGCTTCGACTAACG
G
UFO09839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pask-RA | 3184 | CG3105-RA | 94..1212 | 9..1099 | 4825 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23988986..23989834 | 96..943 | 4100 | 99.6 | Plus |
| 2R | 25286936 | 2R | 23988831..23988918 | 9..96 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:19:00 has no hits.
UFO09839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:56 Download gff for
UFO09839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pask-RA | 115..1123 | 9..1007 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:05 Download gff for
UFO09839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pask-RA | 94..1102 | 9..1007 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:52 Download gff for
UFO09839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pask-RA | 94..1102 | 9..1007 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:52 Download gff for
UFO09839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23988831..23988918 | 9..96 | 100 | -> | Plus |
| 2R | 23988987..23989907 | 97..1007 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:05 Download gff for
UFO09839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19876354..19876441 | 9..96 | 100 | -> | Plus |
| arm_2R | 19876510..19877430 | 97..1007 | 98 | == | Plus |
