UFO09841.5prime Sequence
1101 bp (971 high quality bases) assembled on 2011-10-17
> UFO09841.5prime
CAGTCGACATGAGCGAGTACACAAGCATTCTGCAGCGCGAGTTTCCCAAA
ATCGACCACGAGCTGCTCACCTATGTCGTTGGCGTGCTCACCGGAAGCGA
GGAGGACTTCGAAAGCGGCGATGACATCTTCGAAGCGGTGGGCGACATCC
TGCAGAGCGTCGACTGTGATAGGTCGGAGGAGAGTGTACGTACGCTTTGC
GAGCAGTTCCTCAACATCATGAAGAACAACGAGGTCAACGTGGAGCGAAA
GGTTCTCAACGCGCCGGTCAACATCGAGGAGATGGCCAAGAACATGGAGC
GGCTGGACAAGGATATGCAAAGCATCTGGGTGGCCAACAAAGATGGCGCC
AATAAAGTGGACTCCAAGAAACTAGGAAAGGCGGAGGCCAAGCTGCAGCA
GAAGCAGGAGAAACGGCAGGAGGTGAACAAACATGGTATGATTCCTGTTG
CGGTGAAGCTACAAACGGCCACAGCCTCACAGGTGACCAACAAGAAGAAC
ACCAAGCTGGATCAGAAAGGTCTTAACCGATCCATGGACATCAAGATCGA
AAACTTTGACCTGGCTTTTGGCGAAAAAGTTCTTCTGCAGAATGCGAATC
TGCTGCTGTCTTACGGACGCCGCTATGGTCTGGTGGGACGCAATGGCCTG
GGCAAGACTACACTGCTCCGCATGATTGCCGAGCGACAGCTACAGATCCC
TTCGCACATATCGGTGCTGCACGTGGAGCACGAGGTGGTTGGCGATGACA
CACCAGCAGTGGAGAGTGTGCTGGAATGTGATACTGAGCGAACGAGACTT
CTGACCCGCGAGAAGGAGATTCTGGCTGCCCTTAACAATGGAGTTCAGGA
TGCGACGCTGTCCAATGAGCTGAGCGAGACCTACGCCTCTCTGCAGAACA
TCGAAGCGGACAGCTGTGGCCCGCGCATCTGTGATACTTAAGGCTTGGGA
TTCGATGCAGATATGCAGCTGCGTCACTAAATCTTCTCAGGCGCTGGCGC
ATGCGTCTGCTTGGCAAGGCACTGTTTCTCAAATCCGATCTGTACTGCTC
GATGACGACGACATGTAGAACTCAAGGCATTTGCTGAAACTATTCTGCGA
A
UFO09841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9330-RA | 2384 | CG9330-RA | 130..1201 | 9..1066 | 4935 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19587174..19587611 | 578..1008 | 1880 | 97.9 | Plus |
| 3L | 28110227 | 3L | 19586535..19586791 | 97..353 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 19586892..19587115 | 354..577 | 1120 | 100 | Plus |
| 3L | 28110227 | 3L | 19586382..19586470 | 9..97 | 445 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1050..1101 | 383..433 | 113 | 71.2 | Plus |
UFO09841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:56 Download gff for
UFO09841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9330-RA | 118..1203 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:09 Download gff for
UFO09841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9330-RA | 120..1205 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:56 Download gff for
UFO09841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9330-RA | 120..1205 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:56 Download gff for
UFO09841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19586372..19586469 | 1..96 | 95 | -> | Plus |
| 3L | 19586535..19586791 | 97..353 | 100 | -> | Plus |
| 3L | 19586892..19587115 | 354..577 | 100 | -> | Plus |
| 3L | 19587174..19587680 | 578..1069 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:09 Download gff for
UFO09841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19579472..19579569 | 1..96 | 95 | -> | Plus |
| arm_3L | 19579635..19579891 | 97..353 | 100 | -> | Plus |
| arm_3L | 19579992..19580215 | 354..577 | 100 | -> | Plus |
| arm_3L | 19580274..19580780 | 578..1069 | 95 | | Plus |
