UFO09842.5prime Sequence
1094 bp (967 high quality bases) assembled on 2011-10-17
> UFO09842.5prime
CAGTCGACATGGCGCATTTTCGTAATGGCCAGGAAATACCCATGATATTG
GTCGGAACGCAAGACGCCATCAGCGAGCGCAATCCTCGCGTGATTGACGA
CACCCGTGCCAGGAAATTGGCCAGCGATCTGAAGCGTTGCTCCTACTACG
AGACCTGCGCCACCTACGGCCTGAATGTGGAGCGTGTCTTTCAGGATGCC
TGTCAAAAGATCCTCTCGCAGCGCCTGCCTTTGCCACCACAGGTGCAACC
GGCGAGACCCACGACTCCGCAGGGCAATCGCCTGGGATTGGCTCCCTACC
AGGCGCCCACCAATGGACAACGTGGCCAGCAGCAGCTACCACTGCGAATG
AGTGCGGATTTCGCACAGGCGGAGCAGAAACTTTGGTCGCTGCAAGCGGC
CAGCAGTTCCACCATAAACGAGAATAACAACATCACCAAATACAATCCCG
GAGCGGCCAATTCGCTGCAGGGTGATTGCTCCCAGGTGCAGTTGCGCGAT
CCACGTGATCTGGCGCCACCACCGGGTAAGGAGCTGCCCACACCCACCTC
GACGCCCACGACGAGCCGCAAGAGCCGGCGGCGTTCGAACCTCTTCATCC
CCTCCTCTTCGAAGAAGGCCGACAAGGAGAAGGAGCCAAAGAGCAGTGAA
CTGGGCAGTGGACGTTCCATACCCATTAAACAGGGCTACCTGTACAAACG
CTCTAGCAAATCCTTGAACAAGGAGTGGAAGAAGAAGTATGTGACCCTGT
GCGACGACGGCAGGCTTACCTATCATCCCTCTTTGCACGACTATATGGAC
GATGTGCACGGCAAGGAGATTCCGCTGCAGTACGTCACCGTAAAAGGGCC
GGGACAGAAACCTCGTGGCTCCAAGAGCATAATCACGAACAGTGCGCTCA
CCAGTTCACTGATGGGCCAATGGCCAAGAGCTCAGAACACTCTGAGCGAT
GGCATCGGTTGTCTCACCTGACAGACATCAGCGCAGCTGAGCGAGAATTA
TCCTACTCGGAGCGATCAATGCAGCTGGTGCGTGAAGGCTTGAAGTCGAT
AGCTCAAGCCAGACGAGCGTGACAGGCTAGGCCAGTCTATCAAT
UFO09842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenG1A-RC | 3516 | CG31811-RC | 262..1339 | 9..1069 | 4840 | 97.6 | Plus |
| CenG1A-RA | 3869 | CG31811-RA | 1071..2148 | 9..1069 | 4840 | 97.6 | Plus |
| CenG1A-RB | 4444 | CG31811-RB | 1190..2267 | 9..1069 | 4840 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13895456..13896226 | 198..968 | 3735 | 99 | Plus |
| 2L | 23513712 | 2L | 13895253..13895389 | 62..198 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 13895116..13895170 | 9..63 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:19:19 has no hits.
UFO09842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:57 Download gff for
UFO09842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cenG1A-RC | 240..1281 | 9..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:14 Download gff for
UFO09842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RB | 1190..2231 | 9..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:58 Download gff for
UFO09842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RB | 1190..2231 | 9..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:58 Download gff for
UFO09842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13895116..13895170 | 9..63 | 100 | -> | Plus |
| 2L | 13895255..13895389 | 64..198 | 100 | -> | Plus |
| 2L | 13895457..13896308 | 199..1037 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:14 Download gff for
UFO09842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13895116..13895170 | 9..63 | 100 | -> | Plus |
| arm_2L | 13895255..13895389 | 64..198 | 100 | -> | Plus |
| arm_2L | 13895457..13896308 | 199..1037 | 97 | | Plus |
