UFO09843.5prime Sequence
1078 bp (935 high quality bases) assembled on 2011-10-17
> UFO09843.5prime
CAGTCGACATGCAGGTCCCGCTCAGCGATGTTCAGGTCCTGCAGGATCCC
ACCGACGCGGAAACCCTTGTCGGCGGCGACAAGGAGGAGACCTTTGCCCA
CATGAAGGAGTGGAAGCGCCAGTACATGCGGGGCATCTCGCACACGCCAT
CGCAGGCGGGAGTCTACTACGAGGCCTTGAAGGGTTCCAGCCACTCGCTG
GCCAAAGGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGTTCGCCG
ACGAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGCACCTGC
AAAGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATGGTGGAT
TGGCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTATCCTGTC
TTGGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACACACGGAG
ACTTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGTTGGGCG
CCTTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTTCTCCAT
TGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGCCCGAGT
GTCCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGCGTGATG
TCTTCAGCATTTATGGCCGGAATAGTGTTTGCCAAAGATGACAAGGGCCA
AACAGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTATTTTGCCAA
CGTGATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGCGAAAAAT
CACACATCATTTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACAAAGAG
CACCAAGGAAGGTGAGGTGATGACACAGTACTTCCCAGAACTGGAAGATC
GGTACTGATGACTCCCGGCTCTGATTTGTTCTTCATCCTGGCCCATGGTC
ATCGAGCCCAAAATCGACAAAAACTCCACGCTCTATAATCTTAATGCCCC
TGAATAGGCTGCAGGAAAATTCGAATCGTGGTGAATCCTAAAAGGCACGT
GGGAATCCACTGACACGAGAATTCCAGC
UFO09843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RC | 1485 | CG4370-RC | 50..1097 | 9..1062 | 4760 | 97.4 | Plus |
| Irk2-RB | 1600 | CG4370-RB | 50..1097 | 9..1062 | 4760 | 97.4 | Plus |
| Irk2-RD | 2248 | CG4370-RD | 543..1391 | 208..1062 | 3765 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23514646..23515161 | 1003..482 | 2160 | 96.9 | Minus |
| 3R | 32079331 | 3R | 23515213..23515488 | 483..208 | 1380 | 100 | Minus |
| 3R | 32079331 | 3R | 23518070..23518269 | 208..9 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:19:28 has no hits.
UFO09843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:58 Download gff for
UFO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RC | 37..1078 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:18 Download gff for
UFO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RB | 42..1083 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:02 Download gff for
UFO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RB | 42..1083 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:02 Download gff for
UFO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23515213..23515487 | 209..483 | 100 | <- | Minus |
| 3R | 23518070..23518275 | 1..208 | 98 | | Minus |
| 3R | 23514636..23515159 | 484..1014 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:18 Download gff for
UFO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19340358..19340881 | 484..1014 | 96 | <- | Minus |
| arm_3R | 19340935..19341209 | 209..483 | 100 | <- | Minus |
| arm_3R | 19343792..19343997 | 1..208 | 98 | | Minus |
