UFO09844.5prime Sequence
1042 bp (986 high quality bases) assembled on 2011-10-17
> UFO09844.5prime
CAGTCGACATGGCGGTCTTGTTTTTATCGTCACATGGCGCCTCCAGGCAT
TGGCGGTTGCGGAGGCCGAGTCGCTGGGCGTACAACAGGATGGCGATATT
CAGCAGCACAACGACGGTGGATACCACGACCAGAAAGCGCTCGACTAATA
AGAACCACGTCTCTGTTGTGGGCGCTCTAGTTTCCACTACGAAGTCATCG
CACTACGAGCACCCTTCCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGA
AGAGATGGGAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCC
TCTCGGCCATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTCAAAT
GAGACGACCCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTACAGCA
CACGCAACGGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGATAGCC
CAGCTGTGGAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTG
CAGATTCTGGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGG
CAATTCAAACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCA
CCTGTAACAACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCCATCA
ACCAGCAGGTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAA
TATTACAACCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCC
CGGCCATGAGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAGACTT
TCAGACGAAATACTACTTGACATCTTTAAGTGGCTCCCGAAGAGACGCTG
CTGCGCATGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGA
GACTTTGTGGACAGCTAGATTTGGGTTTGCGGACATTAGACCAGTGCCCT
CGAGCAAATTGTACGGCGGGGAGTCTGTATACGTCTGCCCAGACTAGTAT
TCCAGGAGCCGCATTTGCACCATATAACAGAATGTTAAGACC
UFO09844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 122..1034 | 128..1032 | 4295 | 98.7 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 122..1034 | 128..1032 | 4295 | 98.7 | Plus |
| CG1103-RB | 1223 | CG1103-RB | 676..800 | 133..9 | 625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336496..4337345 | 975..131 | 4035 | 99.4 | Minus |
| 3R | 32079331 | 3R | 4339367..4339491 | 133..9 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:19:38 has no hits.
UFO09844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:58 Download gff for
UFO09844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RB | 68..1118 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:22 Download gff for
UFO09844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RB | 68..1118 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:05 Download gff for
UFO09844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 122..1046 | 128..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:05 Download gff for
UFO09844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336469..4337342 | 134..998 | 98 | <- | Minus |
| 3R | 4339367..4339498 | 1..133 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:22 Download gff for
UFO09844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 165089..165220 | 1..133 | 97 | | Minus |
| arm_3R | 162191..163064 | 134..998 | 98 | <- | Minus |
