UFO09848.5prime Sequence
1117 bp (1007 high quality bases) assembled on 2011-10-17
> UFO09848.5prime
CAGTCGACATGGCGGATTGGAAGAGACCTTTGGAGACCTGCATCGCACTC
TGTGTGCTCCTGTGCGTATTTCACGTGAACGGACAGTGGGAGTTTCCCGC
CCAGTATCCGGAACCGTATCGAAATCCGAATCCGAATCCAGTGCCGGATC
CAACCAGACCGCCGCCGCCACCACCTTCTCCGCCATGTGGAAGACCACCG
CCTGGATCTCCGCCACCGGGCCCGCCTCCACCTGGTCCTCCACCTGGTTG
CCCCGGAGGTCCAGGAGGTCCGCTGCAGCATCGGCAATGGGACAATGGCC
CCAGGCAGTGGCAACCACGTCGTCCGCCACCAAATCACCATCGCAACTTC
CACAACATCTTCCTGAACACCGAAAGCAAAGTGGACGGGGAGAACTACAA
CAAGACCGCGGAGACGGAGGACTTGCACGACGACTTCAATGGCCGATCCA
TTGTGGCACCTGGACAGTACCCGCACATGGCCGCTCTGGGATTCCGGAAC
GAGAACCACGAGATCGACTACAAATGTGGTGGAAGCCTCATCAGCGAAGA
GTTCGTGCTCACAGCTGCTCATTGCCTGACTACTCATGGCACCTCGCCCG
ACATCGTAAAAATCGGAGACATTAAGCTCAAGGAATGGGAGCTCAACGTG
GCGCCCCAAAGACGACGTGTTGCCCAGATCTATCTGCATCCACTGTACAA
TGCGAGTCTTAACTACCATGACATCGGGCTCATCCAGCTGAATCGACCGG
TGGAATACACCTGGTTCGTGAGGCCAGTTCGCCTGTGGCCCATGAACGAC
ATACCATACGGCAAGCTGCACACCATGGGCTATGGCTCGACGGGATTCGC
CCAGCCGCAGACGACATACTCACGGGAACTGGATCTCTCGGTGGTGCCCA
TTGAGCAGTGTAACTCCAGTCTGCCAGCCGACGAAGGTTCCTCCCCACGG
GATTACTCACAAGTCAGATTATGCGCCCATGACTATGAGAAAATCGCGAA
TACTTGCCATGGCGATTCTGGAGACCGCTCACTGAACTTGAACGTCCGCG
TCGAAGGCAACCAAGTCGTAACACCTATCGCCTACTACCTGGTTGACATC
ACATTCGTTGGGAACCA
UFO09848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11670-RD | 1337 | CG11670-RD | 43..1138 | 9..1104 | 5075 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13043250..13043651 | 589..993 | 1780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 13042320..13042644 | 156..480 | 1625 | 100 | Plus |
| 3R | 32079331 | 3R | 13042092..13042240 | 9..157 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 13042884..13042994 | 479..589 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:18:40 has no hits.
UFO09848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:54 Download gff for
UFO09848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11670-RD | 25..1127 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:56 Download gff for
UFO09848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11670-RD | 43..1145 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:45 Download gff for
UFO09848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11670-RD | 43..1145 | 9..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:45 Download gff for
UFO09848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13042092..13042240 | 9..157 | 100 | -> | Plus |
| 3R | 13042322..13042643 | 158..479 | 100 | -> | Plus |
| 3R | 13042885..13042994 | 480..589 | 100 | -> | Plus |
| 3R | 13043251..13043668 | 590..1010 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:56 Download gff for
UFO09848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8867814..8867962 | 9..157 | 100 | -> | Plus |
| arm_3R | 8868044..8868365 | 158..479 | 100 | -> | Plus |
| arm_3R | 8868607..8868716 | 480..589 | 100 | -> | Plus |
| arm_3R | 8868973..8869390 | 590..1010 | 98 | -> | Plus |
