UFO09849.5prime Sequence
1115 bp (1015 high quality bases) assembled on 2011-10-17
> UFO09849.5prime
CAGTCGACATGACCGCCTCACCGGGTCTTCTGCACATGGATCAACCGCTC
AGAGCCATCTATCAATTCTTACTCGACTTGCTAGTGTTTACGATTAAATC
GGTGTACTACGTACTCGAATCGATTTACTACAGTCTGTTGCCGCAGCGCT
TTCGAAAGTTAAAGGACATCTCCGGCCAGGTGGTGCTCATCACAGGAGGA
GGCGGTGGTGTTGGACGTTTGATTGCCCTAAACTTTGCTCGCCTTCAGGC
CCGCATTGTCATCTGGGATATAAATCAAGAAGCCATAAAGACAACTGTGG
ATTTGTTGGCCAAACATGGTTATGACAACTGCAAGGGCTACGTTGTGGAC
ATCTCAGATCGGGAGCAGATCTACCAGCGTGCCAGCCAGGTGACCGAGGA
GGTTGGTCCCGTCGACATATTGATTAACAATGCCGGTATCGTGTGCTGCA
AACCCTTCTGGGAGCTGCACGATCGGGTCATCCAGAACACGTACAACATT
AACATCATATCGCACTACTGGACCGTGAAAGCGTTTCTGCCTCACATGAT
GCGCAATAATCGTGGTCATATCGTTACTGTGGGCTCGGTAACTGGAATGC
TGGGCACCTACGGATGCAGTGACTACGCGGCCACCAAATACGCCTGCATC
GGTTTCCACGAGAGTTTGCTCACCGATCTGAAGGCCCATGGCTATGATCA
AATCCAAATGAGTTTGATCTGCCCGTACTACATCAACACGGGCATGTTTT
CGGGTGTTCGGCCGCGGATGATGCCCATGCTGGAGCCGCAGTATGTGGCG
GATCGCATCGAGAACGCCGTGCGCTGCAACGAGGTGTGGTGCGTGCTGCC
CAACTCTATTCGCCTGCTCACTCCTCTCAAATGTCTTTTGCCCGCAAAAT
GTGCTGGGAGCTGATGTCGCGTGTCATCCGTTGACCCGAGTCTATGATGA
TGTTTCAAGGAACGAGGGCGCGTCGCCGCTGTGCAAGCTTTCTAGACCAT
TCGTTTGGCCGCGCGGCCAGGTAAGTGGTCATAATCATAATCATATCATA
TCATATCACCAACTAGCCTAAGAATCTGTCATGACTAGTGCTTGAATCCA
CCAATAACGCCCCCG
UFO09849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15629-RA | 1432 | CG15629-RA | 345..1318 | 8..981 | 4795 | 99.6 | Plus |
| CG3225-RA | 2387 | CG3225-RA | 2223..2321 | 981..883 | 420 | 96 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4815021..4815623 | 281..883 | 3015 | 100 | Plus |
| 2L | 23513712 | 2L | 4813353..4813510 | 8..165 | 790 | 100 | Plus |
| 2L | 23513712 | 2L | 4814768..4814887 | 163..282 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 4815679..4815777 | 883..981 | 370 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:19:57 has no hits.
UFO09849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:00 Download gff for
UFO09849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15629-RA | 323..1302 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:32 Download gff for
UFO09849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15629-RA | 339..1318 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:12 Download gff for
UFO09849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15629-RA | 339..1318 | 1..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:12 Download gff for
UFO09849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4813347..4813509 | 1..164 | 98 | -> | Plus |
| 2L | 4814770..4814887 | 165..282 | 100 | -> | Plus |
| 2L | 4815023..4815623 | 283..883 | 100 | -> | Plus |
| 2L | 4815680..4815777 | 884..981 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:32 Download gff for
UFO09849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4813347..4813509 | 1..164 | 98 | -> | Plus |
| arm_2L | 4814770..4814887 | 165..282 | 100 | -> | Plus |
| arm_2L | 4815023..4815623 | 283..883 | 100 | -> | Plus |
| arm_2L | 4815680..4815777 | 884..981 | 95 | == | Plus |
