UFO09850.5prime Sequence
1085 bp (986 high quality bases) assembled on 2011-10-17
> UFO09850.5prime
CAGTCGACATGGCTGATCAGAACGAGCGCGCCTTCCAAAAACAATTCGGT
GTCAACCTAAACCGCAAGGTCAAGCCCGGTATCACCAAGAAGAAGCTGCT
GCGTCGCTCCCGCGATGTGGGACTCGGTTTCAAGACCCCACGTGAGGCCA
TCGATGGTACCTACATCGACAAGAAGTGCCCCTGGACCGGTGATGTGAGG
ATCCGTGGTCGCATTCTGACCGGCGTGGTCCGCAAGGCCAAGATGCAGCG
CACCATTGTCATTCGGCGCGACTACCTGCACTTTGTGCGCAAATACAGCC
GTTTCGAGAAGCGTCACCGCAACATGAGCGTCCACTGCTCCCCTGTGTTC
AGAGATGTTGAGCATGGCGATATTGTCACCATTGGTGAGTGCCGTCCTCT
GTCCAAGACTGTGCGCTTCAACGTCCTGAAAGTCAGCAAGGGTCAGGGAG
CCAAGAAGAGCTTCAAGAAGTACGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AACTGGTGAAACTCACCCAGGATTGGCTGAGACGAAAAACATATTCTCAT
AAACCTTAGGAAATAGGCCAGGTTTCACCGTACACGCCAATCTGCGAATA
TATGTGTAGAACTGCTGAAATCGTCTGTATCACTCAGAGCGATGAACGGT
TCAGTTGCTCATGGAACGTGTAAAAGTTAACTATC
UFO09850.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS11-RC | 738 | CG8857-RC | 28..494 | 7..473 | 2335 | 100 | Plus |
| RpS11-RB | 569 | CG8857-RB | 162..491 | 144..473 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12199834..12200041 | 352..145 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 12200115..12200244 | 147..18 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 12199469..12199592 | 473..350 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:20:07 has no hits.
UFO09850.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:01 Download gff for
UFO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RC | 36..513 | 1..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:37 Download gff for
UFO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RC | 23..500 | 1..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:16 Download gff for
UFO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RC | 23..500 | 1..479 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:16 Download gff for
UFO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12199469..12199589 | 353..473 | 100 | <- | Minus |
| 2R | 12199834..12200039 | 147..352 | 100 | <- | Minus |
| 2R | 12200116..12200249 | 13..146 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:37 Download gff for
UFO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8086974..8087094 | 353..473 | 100 | <- | Minus |
| arm_2R | 8087339..8087544 | 147..352 | 100 | <- | Minus |
| arm_2R | 8087621..8087754 | 13..146 | 98 | | Minus |
