UFO09856.5prime Sequence
1081 bp (998 high quality bases) assembled on 2011-10-17
> UFO09856.5prime
CAGTCGACATGGAGTCAATTAGCAGCATGATTTATTTAGTGGCCATGATG
TCATTGATCATCGGTGGCAGCCAAGCGATTCCTTATCGACCCTCGGCGTA
TCTGTACAATCAGCAGTACTGTATGGATACATTGACGGGTCGGCAGCTTT
ATATCGGTGAAGTCTTCACGCGAGAGGATCAGTGCGTCCGCATCCAATGC
CTGGAAACGCTGCAACTCTGGGAGGATAGCTGCCAGGTGCCGAAACTGAC
GCAGGGCAATTGCACGCCAGTTCCATCGACGAACCCGCATGCCGAATATC
CCCGATGCTGCCCACTGTATGAGTGCAAGAGCTACGAGTCGAATTCGGGG
GGAACTCTGGAGCAGACCAACATATATGACCACTATGGTACTCTGCGATC
ATCCCATCTCACTGAGATGATAGTGATCGACGGGCGGACACCCCCTCGTG
GCGAGATTCACACGGCGTCGGCGAGGAAGTATCAGGTGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAGAGTTGTCCATATTGGC
ACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATGCTGAGACGAAAAC
ATATCTCATAAACCCTTTAGGAATAGCAGTTTTCACGTACACGCCACATC
CTGCCAATATATGTGTAGAACTGCGAATCGTCCTGCATCATCGAGCGATG
AACGTCCAGTTGCCATGGAACGGTTACATGT
UFO09856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vago-RD | 796 | CG2081-RD | 82..561 | 9..488 | 2400 | 100 | Plus |
| Vago-RB | 684 | CG2081-RB | 82..561 | 9..488 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11089724..11089984 | 228..488 | 1305 | 100 | Plus |
| X | 23542271 | X | 11089521..11089659 | 91..229 | 695 | 100 | Plus |
| X | 23542271 | X | 11089371..11089452 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:20:37 has no hits.
UFO09856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:03 Download gff for
UFO09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vago-RB | 77..561 | 1..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:50 Download gff for
UFO09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vago-RB | 77..561 | 1..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:25 Download gff for
UFO09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vago-RB | 77..561 | 1..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:25 Download gff for
UFO09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11089726..11089984 | 230..488 | 100 | == | Plus |
| X | 11089366..11089452 | 1..90 | 95 | -> | Plus |
| X | 11089521..11089659 | 91..229 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:50 Download gff for
UFO09856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10983399..10983485 | 1..90 | 95 | -> | Plus |
| arm_X | 10983554..10983692 | 91..229 | 100 | -> | Plus |
| arm_X | 10983759..10984017 | 230..488 | 100 | == | Plus |
