UFO09857.5prime Sequence
1097 bp (996 high quality bases) assembled on 2011-10-17
> UFO09857.5prime
CAGTCGACATGGCCTGTCGCTGCAAATATCTGAAGCAGATCTTTACCAAG
TGCTGCTACTGCTATTCCCTGCGTTTCGGTGTGCTGCTCTTCGGATGCAT
TTTTCTAACCTGGTTCATTTACATCACCATCGGCACCGGCTTCATGATGG
AGTGCATCTTTCCGAACGAGTATCAGAGGTCCCTTATCCCAGCACCGGCG
GCCCTCAAGGCCACCATGGTCTTCTCCTTCTTCGGCATCATAGTTTCGGC
CATGCTCTGCCTGGGAGTGCACAATAACAACGAGATGCTCTTCCTGCCAT
TTTTGGTTTTCACACCCATTTGGATAATTGTGCACATTTTTGCCCTGACC
GTTTACAGCTTTAATACCATCATCATCATCCTGACTGTCATCACAATGTT
ACTTTTAGTGTATGCCTGGCTGGTGGTTTGGTCCTACTACATAGAACTGC
TCTTCGCCTACGAAGATGAACTGGAAACCGGTTATGTGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCCGCCTTG
CGTATATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGATTGCTGAAACGAA
AAACATATTCTCAATAAACCTTTAGGAAATAGCAGGTTCACGTAACACGC
CACATCTTGCGAATATATGTGTAGAACCTGCGAATCGTCTTGTTCACTCG
AGCATGAAACGTTCAGTGCCATGAACGGTACAAGGTGACCCTTCCCA
UFO09857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42288-RA | 648 | CG42288-RA | 78..558 | 8..488 | 2405 | 100 | Plus |
| CG42288-RB | 639 | CG42288-RB | 78..549 | 8..488 | 2260 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14091108..14091375 | 8..275 | 1340 | 100 | Plus |
| 2R | 25286936 | 2R | 14091448..14091571 | 276..399 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 14091636..14091724 | 400..488 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:20:41 has no hits.
UFO09857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:03 Download gff for
UFO09857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42288-RA | 69..561 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:53 Download gff for
UFO09857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42288-RA | 69..561 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:28 Download gff for
UFO09857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42288-RA | 69..561 | 1..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:28 Download gff for
UFO09857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14091099..14091375 | 1..275 | 98 | -> | Plus |
| 2R | 14091448..14091571 | 276..399 | 100 | -> | Plus |
| 2R | 14091636..14091724 | 400..488 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:53 Download gff for
UFO09857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9978953..9979076 | 276..399 | 100 | -> | Plus |
| arm_2R | 9979141..9979229 | 400..488 | 100 | == | Plus |
| arm_2R | 9978604..9978880 | 1..275 | 98 | -> | Plus |
