UFO09859.5prime Sequence
1106 bp (993 high quality bases) assembled on 2011-10-17
> UFO09859.5prime
CAGTCGACATGCGTTTATATAAAATATTCTGCCTAATTTGTTCCATATTT
GGCTGTGTTTCAGCTTTAAAAGATCCGAGCTGTGCTGTTGAGTTGTTTGG
CCAAGGTGCTTGCAACACTTTGATTACTCGAATCGGCTATTTACGTTGGG
AAAACATGTGTACATCAAAGAACTTTGTTGCATGCGACACCGATGGAACT
TCATTTGAGAGCATTAAGGAATGCGAAGATAAATGCAAAGAGGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCAT
ATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTT
TCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAA
ATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCAT
GGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCG
TCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGCAGATG
TGATAACGCCGATAAACTGTGCTTATTTTTCTTACGTCTTAAAAGCGTAT
ATCAGCTGACGTCTGTTATAGTACATTGAGCAACTGACTGATGCTCAATG
TTCTTACGATGCCATGGATATCACGTGTATCAGTATTTTTCCATAGCTTC
TAGCCT
UFO09859.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp23F-RA | 322 | CG42459-RA | 36..269 | 9..242 | 1155 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3387407..3387573 | 242..76 | 835 | 100 | Minus |
| 2L | 23513712 | 2L | 3387642..3387708 | 75..9 | 320 | 98.5 | Minus |
Blast to na_te.dros performed 2014-11-27 00:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 811..878 | 123 | 68.1 | Plus |
UFO09859.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:37:59 Download gff for
UFO09859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp23F-RA | 36..276 | 9..250 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:27 Download gff for
UFO09859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp23F-RA | 36..276 | 9..250 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:08 Download gff for
UFO09859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp23F-RA | 36..276 | 9..250 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:08 Download gff for
UFO09859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3387407..3387573 | 76..242 | 100 | <- | Minus |
| 2L | 3387642..3387708 | 9..75 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:27 Download gff for
UFO09859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3387407..3387573 | 76..242 | 100 | <- | Minus |
| arm_2L | 3387642..3387708 | 9..75 | 98 | | Minus |
