UFO09903.5prime Sequence
958 bp (954 high quality bases) assembled on 2011-10-17
> UFO09903.5prime
CAGTCGACATGTCTGAGAAATCAAAAACATCAGTAGTGAATGTTCGCTAC
ACTAACAAGTTGTCGAGCAATTCTTCGCGTGCGGAAATGCTATCCTGGGT
GAATAACACGTTGAAATCGCAGTTTTTCAAGGTCGAGGAATTGTGCACCG
GAGCGGCATACTGCCAGTTAATGGACATACTGTTTGCCCGGTCGATCCCG
ATGCAGCGAGTCAAGTTTCGCACAAACGTTGAGTATGAGTACATCCAGAA
TTTCAAGCTTTTACAGGGATGTTTCAACAAATTTGTTGTTGATAAGATCA
TTCCCATCGACCGGCTGGTCAAGGGACGATACCAGGATAACTTCGAGTTC
CTTCAGTGGTTTCGCAAGTTCTTCGATGCCAACTATGAGAGTCGAGAATA
TGATCCTGTGATAGCTCGGAATGGAGCAATGCTGGGACTTGGCTCGCCTC
CCATGGAAGCCAAGTTACGCAAATCAGTGAATAAGTCAAATCCCCAAACT
AAACCCACCGAAGAATCCTCTGCTCAAACAGATAGGGCAACAACAGAACC
GAAAAATCAAGTGTATAAGTCAAATTCTGAAAATAAAACCATCGAAGAAG
CCTCTGCTCAAACAGATTTGGCAATAACAGAGCCGGAAAATCAAGTGCAT
GAATCCCAAACTAAAACCACCGAAAAAGCCTCTGCTCAAACAGAAAAAGC
AACAACAGAGCCCGGATAGTGAAGGTTCCATTGAGGAGTTGCGGAATTAC
TGTAAATATGTTTCGAGAATGAAACAGGAGAGGAACTTTTACTTATCAAA
ACTCCGAGCTATTGATCATATTTGCCAGAAATACAATAGTGGCCGAGATA
GGGTAATCTTAGAAAAGATTACTTAAGATTATTTACAGCGAAGCAAGCTT
TTCTAGACCATTCGTTTGGCGCGGCGGGCCCAGGTAAGTGGTCTTTAATC
ATAATCAT
UFO09903.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32371-RA | 1084 | CG32371-RA | 82..963 | 9..892 | 4370 | 99.8 | Plus |
| CG32371-RA | 1084 | CG32371-RA | 627..788 | 471..637 | 335 | 81.5 | Plus |
| CG32371-RA | 1084 | CG32371-RA | 544..707 | 554..712 | 320 | 81.2 | Plus |
| Eb1-RF | 1891 | CG3265-RF | 299..576 | 133..410 | 250 | 73.1 | Plus |
| Eb1-RG | 2043 | CG3265-RG | 206..455 | 133..382 | 245 | 73.7 | Plus |
| CG32371-RA | 1084 | CG32371-RA | 728..786 | 493..551 | 190 | 88.1 | Plus |
| CG32371-RA | 1084 | CG32371-RA | 566..620 | 655..709 | 185 | 89.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7767390..7768271 | 892..9 | 4320 | 99.8 | Minus |
| 3L | 28110227 | 3L | 7767565..7767720 | 637..476 | 295 | 80.2 | Minus |
| 3L | 28110227 | 3L | 7767646..7767804 | 712..560 | 280 | 79.9 | Minus |
| 3L | 28110227 | 3L | 7767567..7767625 | 551..493 | 190 | 88.1 | Minus |
| 3L | 28110227 | 3L | 7767733..7767787 | 709..655 | 185 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:20:59 has no hits.
UFO09903.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:05 Download gff for
UFO09903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32371-RA | 74..971 | 1..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:03 Download gff for
UFO09903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32371-RA | 74..971 | 1..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:35 Download gff for
UFO09903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32371-RA | 74..971 | 1..900 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:35 Download gff for
UFO09903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7767382..7768279 | 1..900 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:03 Download gff for
UFO09903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7760482..7761379 | 1..900 | 98 | | Minus |
