UFO09908.5prime Sequence
1081 bp (936 high quality bases) assembled on 2011-10-17
> UFO09908.5prime
CAGTCGACATGGATTTCAACAAGCGACAGAACATGGAGGAGGTGGTGCGC
ATCGGAGGCAAAGGATCTATGCGCCGCAAGCATAAGAGAATCCCATCAGT
AGCTGCGGTCGATGAGAAGCGCGTGCAGGCGACATTGGCCAAGATACCGT
TAAAGAATATCAGCGGAATCCATGAGTTGACCATCGAGTTCACCGATTCC
AGTGAGGTTGTGGTAGTCATGCCCAAGGTTCAGGGCATCTCTGCCAATGG
TTTGTTAGTTGTTAATGGCGATTTCGTGCGCAAATCGTCAACAGCTGGCC
CATCGAAAATGGCCAAAGCAGCCAAGGCACCCAAGGCACCCAAGGCACCC
AAGGCACCCAAGACACCCATGGCACCCATGGCACCCATGGCACCCATGGC
ACCCATGACACCCAAGCCGGAAGCTTTTTCCGTCAAAAAGCCAGAATCAG
AGGAAACCATTAAGGTGGTGGCCAAGAAGCCCAAGAAGCTGCGCAATCGT
GTTCGTCCTCGCAACAAGAAGGTCCAAATGATGCTCTCTAAAAACAATGA
GGAAGCAGCCATGGCTGGCGGGGATTCGGAGCCGAAGCTTAGCAATGGTA
AATCAATTTTGATCTCCTCTGAAGATGGTAGCGATCCGGATAATGAGAAG
GTGCCATCGGATGAGTCTGATGTGGATCGGACCGTCGTCTGCGACAAAGA
TTCGCTGGGAAGTTTCGGCGATGATTCCGACGGCAAGGAGGACGATGACA
GTAAGGAGTCGATTTACCTATCTTTCTACTCCGATGGCTATGATTCCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTGGGAGATCCTGAT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCGCGGCAACCGAG
CGTTCTGACAAATCCAGATGGAGTCTGAGTCATACTGGATCTATCACAGA
AGTCCAGCGAGCTCGATATCAAATTACGCCCGCCCTGCACTCCATCGCAG
TACTGTTGTATCATAAGCATTCTGCCGACAT
UFO09908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaNACtes4-RA | 1012 | CG18313-RA | 103..891 | 9..797 | 3945 | 100 | Plus |
betaNACtes3-RA | 967 | CG32601-RA | 419..848 | 367..799 | 1735 | 93.5 | Plus |
betaNACtes6-RA | 967 | CG32598-RA | 419..848 | 367..799 | 1690 | 92.8 | Plus |
betaNACtes3-RA | 967 | CG32601-RA | 118..468 | 9..362 | 875 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14380507..14381295 | 9..797 | 3945 | 100 | Plus |
X | 23542271 | X | 14379278..14379707 | 367..799 | 1710 | 93.5 | Plus |
X | 23542271 | X | 14316249..14316678 | 799..367 | 1665 | 92.8 | Minus |
X | 23542271 | X | 14171744..14172169 | 795..367 | 1555 | 91.4 | Minus |
X | 23542271 | X | 14314760..14315019 | 799..540 | 1120 | 95.4 | Minus |
X | 23542271 | X | 14172120..14172470 | 362..9 | 955 | 85.3 | Minus |
X | 23542271 | X | 14316629..14316979 | 362..9 | 850 | 83.3 | Minus |
X | 23542271 | X | 14378977..14379327 | 9..362 | 850 | 83.3 | Plus |
X | 23542271 | X | 14315113..14315412 | 308..9 | 675 | 81.7 | Minus |
X | 23542271 | X | 15576746..15576921 | 559..736 | 415 | 84.2 | Plus |
X | 23542271 | X | 14315018..14315112 | 484..390 | 265 | 85.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:22:09 has no hits.
UFO09908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:10 Download gff for
UFO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18313-RA | 103..896 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:43 Download gff for
UFO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaNACtes4-RA | 103..896 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:04 Download gff for
UFO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaNACtes4-RA | 103..896 | 9..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:04 Download gff for
UFO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14380507..14381300 | 9..803 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:43 Download gff for
UFO09908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14274540..14275333 | 9..803 | 99 | == | Plus |