UFO09911.5prime Sequence
1104 bp (994 high quality bases) assembled on 2011-10-17
> UFO09911.5prime
CAGTCGACATGTATCGCTGCAAAAATTGGTTTTGTGCGCGCAGCAACAAC
AACAACTACGTCGATGTGGCACTAAGCGAGGCACCACCCATCCATCCCAG
TGCAGCCACAACAACCACACCGAATAGCCGCAACTTTAGCGCCAGCAACA
ATAATAACGTGCGAAGCAACAGCAGCAAAAGTAATCAGCAAACAGCGGCA
CATAGAGGCGCTACCACCCATCCCACCCAAATCCCCCACACACACCACCC
AAGCACCACCCACTCGACCGATGAGGCTTCTCCGCCACAGGCCCACGTGG
TTACCTTTCTGGACGAATCCACAGCAGGCGGGAGCAACGGTGCCGTGACC
AGCAGCCGCCTGGTCACCACCGCCGAACTGCATCAGGCCCATATGCTGGA
GCACCACTCGAATCTGGACGCCATCGAGCAGGCGGACGACTTCATCTACG
GTCCTGGCGCAGGACTTTCGCTGTGCGACGACAGCCTGCCATCGGCCAAA
AACTGCTATCGACTGGTTATGCTCGGCTCATCACGCGCCGGCAAGTCATC
GATTGTGGCACGTTTCCTGGGCAATCGGTTCGAGGAGGCCTACACGCCGA
CCATCGAGGAGTTCCACCGCAAATTGTATCGCATACGGAATGAAGTCTTT
CAATTGGATATTTTGGATACTTCTGGCTATCATCCGTTTCCCGCAATGCG
ACGTTTATCATTTCTAACTGGGGATCTCTTCATCCTCGTCTTCAGCATGG
ATTCCCGCGAGTCCTTCGAGGAGGTGGTTCGCCTGCGGGAGAACATTCTG
GAGACCAAGTGGGCTGCACTAAATCCCGGCTCCGGGTTTAAGAAGAAGAG
TCTTCCAAGATACCCATGATATTGGCGGGAAATAAATGTGATCGAGACTT
TAAAACTGTTCAGTGGACGAGGTGATGGGCTACATCGCTGCCAGGACAAC
TGCTGCACCTTTGTGGAGTGCTCGGCTCGATCAGAATACCGCATCGATGA
CTATTTCACTCGCTGTAACGTCTCAATCTGCCGCTGAGATGACCCCCAAT
CATCATCTCATGACTCGCTTCGTGTTGTTGGGGCCTCCTCGCCAATCCAC
AAAC
UFO09911.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8641-RB | 3264 | CG8641-RB | 550..1614 | 1..1057 | 5020 | 98.7 | Plus |
| CG8641-RA | 2288 | CG8641-RA | 550..1614 | 1..1057 | 5020 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7062357..7062882 | 526..1 | 2600 | 99.6 | Minus |
| 3L | 28110227 | 3L | 7061849..7062044 | 721..526 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 7060854..7061038 | 903..720 | 875 | 99.5 | Minus |
| 3L | 28110227 | 3L | 7060580..7060730 | 1057..913 | 355 | 90.1 | Minus |
Blast to na_te.dros performed 2014-11-27 00:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7004 | 40..338 | 181 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6864 | 102..225 | 166 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2395 | 109..200 | 145 | 66.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1143 | 98..200 | 141 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2446 | 103..206 | 134 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2729..2840 | 103..219 | 130 | 61.5 | Plus |
UFO09911.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:06 Download gff for
UFO09911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8641-RA | 550..1614 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:13 Download gff for
UFO09911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8641-RA | 550..1614 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:44 Download gff for
UFO09911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8641-RA | 550..1614 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:44 Download gff for
UFO09911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7061850..7062043 | 527..720 | 100 | <- | Minus |
| 3L | 7060580..7060740 | 904..1057 | 93 | <- | Minus |
| 3L | 7060854..7061037 | 721..903 | 99 | <- | Minus |
| 3L | 7062357..7062882 | 1..526 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:13 Download gff for
UFO09911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7053954..7054137 | 721..903 | 99 | <- | Minus |
| arm_3L | 7054950..7055143 | 527..720 | 100 | <- | Minus |
| arm_3L | 7053680..7053840 | 904..1057 | 93 | <- | Minus |
| arm_3L | 7055457..7055982 | 1..526 | 99 | | Minus |
