UFO09913.5prime Sequence
1057 bp (921 high quality bases) assembled on 2011-10-17
> UFO09913.5prime
CAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTTTGTGGCAG
GTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAGCAGACGGT
GCAGTCGGTGCAGTCCATGCAGTCCGTGCAGCATAGCCAGCTGCTTCAAT
CCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGAGCAACTAT
AACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGTCCAATGGG
TGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTCTATCAACA
CCTACAATGCTGGCTTATATCAAACCAATGAACCACCGCTATTGGGACCC
GGAGCCGCTTTCCCACCATTCGGAGCTCCCGAATATCACACCACCACACC
GGAGAACTGGAAGGGGGCCGCCATCCATCCCACTGGCCTGATGAAGGAGC
CCGCTGGTGTTGTGCCCGGACGCAATGCTCCGGTGGCCTTCACACCGCAA
GGACAGGCTCAGGGCGCCGTCATGATGGTCTACGGCCTGAACCACGACAC
TTCCAACACGGATAAGCTCTTCAATTTGGTTTGCCTGTACGGCAACGTGG
CACGGATCAAGTTCTTGAAGACCAAAGAGGGCACCGCCATGGTGCAAATG
GGAGACGCTGTGGCCGTTGAGCGTTGCGTGCACCACTTGAACAACATTCC
CGTGGGCACTGGTGGCAAGATACAGATCGCTTTCTCCAAACAGACTTCCT
ATCCGAGGTGATCAACCCGTTCTTGCTGCCCGATCATTCGCCCAGCTTCA
AGGAGACACCGGCTCCAAGAACAATCGTTTCCTATCGCCGGGCCAAGGCG
AGCAAGATTCGCATTCAACCACCGAGCAAGATTTTGCACTTTTTCAACCA
CACGGCCCGGCTTGACCGAGGACCAACTGATTTGAATCTTTACATCAGGA
TTGTGCCCGCCAATCGGTGCGCCCTGTTCCCATGGAGACCGAAGCGCTCC
GTCTGTCAGGGACCTGATCGAATTTACCCATATCTCGCAGGCAGCTGGCC
TTATCTT
UFO09913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RB | 1783 | CG9218-RB | 301..1334 | 8..1044 | 4690 | 97.6 | Plus |
| sm-RW | 1179 | CG9218-RW | 19..730 | 330..1044 | 3080 | 96.5 | Plus |
| sm-RV | 3190 | CG9218-RV | 1642..2353 | 330..1044 | 3080 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19546449..19546771 | 330..8 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 19532436..19532712 | 880..605 | 1195 | 97.8 | Minus |
| 2R | 25286936 | 2R | 19538029..19538212 | 513..330 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 19537776..19537872 | 605..509 | 470 | 99 | Minus |
| 2R | 25286936 | 2R | 19532262..19532376 | 992..879 | 265 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:22:43 has no hits.
UFO09913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:13 Download gff for
UFO09913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RB | 278..1218 | 1..942 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:59 Download gff for
UFO09913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RB | 295..1235 | 1..942 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:21 Download gff for
UFO09913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RB | 295..1235 | 1..942 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:21 Download gff for
UFO09913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19532314..19532374 | 881..942 | 95 | <- | Minus |
| 2R | 19532436..19532711 | 606..880 | 97 | <- | Minus |
| 2R | 19537776..19537868 | 513..605 | 98 | <- | Minus |
| 2R | 19538030..19538211 | 331..512 | 100 | <- | Minus |
| 2R | 19546449..19546774 | 1..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:59 Download gff for
UFO09913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15419819..15419879 | 881..942 | 95 | <- | Minus |
| arm_2R | 15419941..15420216 | 606..880 | 97 | <- | Minus |
| arm_2R | 15425281..15425373 | 513..605 | 98 | <- | Minus |
| arm_2R | 15425535..15425716 | 331..512 | 100 | <- | Minus |
| arm_2R | 15433954..15434279 | 1..330 | 98 | | Minus |
