UFO09917.5prime Sequence
1085 bp (990 high quality bases) assembled on 2011-10-17
> UFO09917.5prime
CAGTCGACATGTCGTTCCTGGGCAACACATCCGATCTGGAGTGCGAAAAG
AACGAGTTCCCGAGGCAGCGACCCTCGGGCATCATCACCAAGGTGGCCGC
CCACAAGCTCTCCGCGGAGCCCAAGTGGACGGACAAGCGGGAGGATGACT
CCGATTCGGAGGTCTCGTCGCCGGATAATTTCCTGACCAAAGGCGCCTTC
CTATTGACCCCATCCTACGAGTTGTCCATGGAACGGGCGGCCCTCATCTG
CGAGAAGATGGCATTCAAGGGATGCTTCAGCTTGACCAAAACCGCTACAG
GCATTCTGTTTAAATTCTCACATCCAGATGACTATCAGGCGGTGTTCAAG
AAGGGCTTCCACAAGGTTACCGGGGCGCGATTCTACCGCAAGATTGCCAT
ACCGTGTCGGCCGAGGAAGACCTTCACCCTGTACGTGCTGGATGTGCCCG
AGGATCTGCCCGTGGAGGATATCCGGCATGCCATGTACAAGTTCGATTCG
GTGGTGGAGGTGGTGCGCCTGCACATCTACTCGAGCCTCGCCAGCAATGC
CGCCAATGCCACCTCCTCCTCCGCCGTTGCCGCCAGCAGCTCCTCCGGCG
GCGGTGATAAGGGCGTCGAAGGCGTCTCCAAGAGCGTGGGTTCTGTGGTG
GGCGATGCCATCGAGAAGGCCGAGCGTCCTGAGCGCAGAGAACTGCCTCC
AGCCGTTATCCGGGTCACCCTGGCCTCCATGGATGAGTACAACATTCTGT
TGCAGAACGGACTCAACTTCTACGATGCCACGTTCTTTCCCACTGAGGCC
AACATCTCGCTGAGGGGCGCCAAGATCGATTATAGCGCAGAATGCTCGAT
GGCTCGATTCCCGGACGGGTGAGGGAACTGCTGCCCGTTTTCGATGCGGC
TGGCTTCTGCAGCTGCCACCGCCCACCAGCAGCTATAAGCCGCGAGGTCG
GCAAGCTTTCTAGACATTCGTTGGCGCGCGGCCAGGTAGTGTCAAATCAT
ATCATATCATATCATATTCAACTAGCCCTAGGAGATCCTGTTCATGACTA
GTGCCTGAATCTCACATTAAAACGCCGGCGCAACG
UFO09917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14445-RB | 1548 | CG14445-RB | 164..1113 | 7..950 | 4595 | 99.3 | Plus |
| CG14445-RA | 1608 | CG14445-RA | 164..779 | 7..622 | 3080 | 100 | Plus |
| CG14445-RD | 1668 | CG14445-RD | 164..549 | 7..392 | 1930 | 100 | Plus |
| CG14445-RA | 1608 | CG14445-RA | 839..1173 | 622..950 | 1520 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6238944..6239175 | 391..622 | 1160 | 100 | Plus |
| X | 23542271 | X | 6239386..6239600 | 620..834 | 1060 | 99.5 | Plus |
| X | 23542271 | X | 6237999..6238200 | 191..392 | 1010 | 100 | Plus |
| X | 23542271 | X | 6237478..6237664 | 7..193 | 935 | 100 | Plus |
| X | 23542271 | X | 6240006..6240100 | 838..931 | 425 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:23:22 has no hits.
UFO09917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:16 Download gff for
UFO09917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14445-RB | 156..1111 | 1..950 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:20 Download gff for
UFO09917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14445-RB | 158..1113 | 1..950 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:32 Download gff for
UFO09917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14445-RB | 158..1113 | 1..950 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:32 Download gff for
UFO09917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6237472..6237663 | 1..192 | 97 | -> | Plus |
| X | 6238001..6238200 | 193..392 | 100 | -> | Plus |
| X | 6238946..6239174 | 393..621 | 100 | -> | Plus |
| X | 6239388..6239607 | 622..840 | 99 | -> | Plus |
| X | 6240009..6240100 | 841..931 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:20 Download gff for
UFO09917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6131505..6131696 | 1..192 | 97 | -> | Plus |
| arm_X | 6132034..6132233 | 193..392 | 100 | -> | Plus |
| arm_X | 6132979..6133207 | 393..621 | 100 | -> | Plus |
| arm_X | 6133421..6133640 | 622..840 | 99 | -> | Plus |
| arm_X | 6134042..6134133 | 841..931 | 98 | == | Plus |
