UFO09921.5prime Sequence
1079 bp (905 high quality bases) assembled on 2011-10-17
> UFO09921.5prime
CAGTCGACATGAACTACGTGGGACTGGGACTTATCATTGTGCTGAGCTGC
CTTTGGCTCGGTTCGAACGCGAGTGATACAGATGACCCTCTGTTGGTGCA
GCTGCCCCAGGGCAAGCTACGTGGTCGCGATAATGGAAGCTACTACAGCT
ACGAATCGATTCCCTACGCCGAACCGCCCACTGGCGATCTACGATTCGAG
GCTCCAGAGCCGTACAAACAAAAGTGGTCGGATATATTCGATGCCACCAA
AACCCCGGTGGCGTGCCTGCAGTGGGATCAGTTCACGCCTGGGGCCAACA
AATTGGTAGGAGAGGAGGATTGCCTAACCGTCAGCGTCTACAAGCCGAAG
AATAGCAAGAGGAATAGCTTTCCGGTGGTGGCCCACATTCACGGAGGTGC
CTTTATGTTCGGTGCAGCATGGCAAAATGGACACGAGAACGTGATGCGTG
AGGGCAAATTCATTCTGGTGAAGATAAGCTATCGCCTGGGGCCATTGGGT
TTCGTGAGCACCGGCGATAGGGATCTTCCCGGAAACTATGGACTGAAAGA
TCAACGGCTGGCTCTCAAATGGATTAAGCAGAATATAGCCAGTTTTGGTG
GAGAACCGCAGAACGTACTGTTGGTTGGTCACTCCGCTGGAGGAGCTTCG
GTCCATCTGCAGATGCTTCGTGAAGATTTCGGCCAGCTGGCCAGGGCGGC
ATTCTCGTTTAGTGGAATGCTCTAGATCCATGGGTTATACAGAAGGGAGC
AAGAGGACGAGCCTTTGAACTGGGACGCAACGTGGGATGTGAATCGGCTG
AAGACTCGACCAGCCTGAAGAAATGCCTAAAGTCAAGCCAGCCAATTGAA
TTATCCACCGCCGTCCGTAAATTCCTTATATTTTCCTATTGTGCCCTTTG
CCTCCATTTAAGTCTTGTTATTGAAGCCATCGGAATGCCTCCAGACGCCA
TTATCACCCAGAATCCCAGGGGATGTCATTAAAAGCGGAAAGTTCGGACC
AGTTTCGTGGGCCTGTTTCTCAATTGTCCATGAAGAATGTTGCTACATGC
CGCATTGCCTTGACACCGGAATCTCTTGA
UFO09921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-6-RB | 1837 | CG6917-RB | 40..1045 | 7..1019 | 4650 | 97.9 | Plus |
| Est-6-RA | 1712 | CG6917-RA | 40..1045 | 7..1019 | 4650 | 97.9 | Plus |
| thoc6-RC | 2869 | CG5632-RC | 2070..2704 | 774..141 | 390 | 71.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12188857..12189856 | 7..1012 | 4400 | 97.4 | Plus |
| 3L | 28110227 | 3L | 12190861..12191495 | 141..774 | 365 | 70.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:23:31 has no hits.
UFO09921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:17 Download gff for
UFO09921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-6-RA | 18..1028 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:26 Download gff for
UFO09921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-6-RA | 35..1045 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:35 Download gff for
UFO09921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-6-RA | 35..1045 | 1..1019 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:35 Download gff for
UFO09921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12188852..12189862 | 1..1019 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:26 Download gff for
UFO09921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12181952..12182962 | 1..1019 | 97 | | Plus |
