UFO09923.5prime Sequence
1126 bp (1008 high quality bases) assembled on 2011-10-17
> UFO09923.5prime
CAGTCGACATGGAATTGAAAGGAGTTCAGCCATCGAATGGCAGCTCAAAT
GGAAGTGGAAATGGAGCCACCAATGCTGCATCAACGGAAAAAACAGATGC
CGAGAAGCCGACGGCGGAGCGCACCAATTGGGGCAATGGCCTGGAGTTTC
TAATGTCCTGCATATCGGTGTCCGTGGGATTGGGCAACGTCTGGAGGTTC
CCGTTCACGGCCTATGAGAATGGAGGAGGCGCCTTCCTTATACCCTACAT
CATAGTGCTCTTTCTGATCGGCAAACCCATGTACTATTTGGAGATGATCA
TGGGCCAGTTCACGAGCCAGGGAACGGTGAAGATTTGGTCGGTGGTGCCG
GGATTTGTGGGCGTGGGCTATGGCCAGGCCTTCGGCACCATCTGCATCAT
CTCGTACTATTCCTCGCTGTTGGCGCTGACCCTCTACTATCTCTTTGTGT
CCTTCCAATCGGAATTGCCGTGGTCCTACTGTCGCGATGAGTGGACCAAT
TGCGTGAACTCGAGGCCGCAGGAGTATGTGGACAATCTGCTTACGGGCGT
ATCCTTGGCCAATGAATCGGCCAGAAATCTCAGCGGCATTGTGGCCAACG
ATGAGACAGAGAAACTCCAGAGCAGCTCCGAACTCTATTTCCTGAATGTA
GTGATCAAGGAGAAGCTGGACATCTCGGACGGCGTTGGTGATCCCGATTG
GAAGCTGACACTTGCCCTGTTCGTCGCCTGGTGGTCATCTTTCTGGTGAT
CATGCGAGGGTGAAGAGTTCCGGCAAGGCGGCCTACTTCCTGGCCCTGTT
CCCTACGTGGTGCTCTTCGTCCTGCTGATCCGTGCCGTTACCTTGGAGGG
AGCACGCGATGGCATTCTGTTCTTTCTGGAGCCACAGTGGGGTGAACTCT
TGAACCCCCACCGGTTTGGAAGGAGGCCGTTGTGCAGTGCTTCTTCTCGC
TGGCCGTGGGCTCCGGACCCATTATCATGTTCGCCTCGTACAATCGATTC
GATCACGGATCTTAAGGGATGCCATGATCGTACCAACTGGAACCGCTGAA
CAGCCTCCTGGGAGTTATACGATTATGGCATCTTTGGCCATCTGGCGCCT
ATCTTGCAAACGTAAACTCAAGATGT
UFO09923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NAAT1-RA | 2485 | CG3252-RA | 284..1379 | 9..1098 | 5075 | 98.1 | Plus |
| CG15279-RD | 2513 | CG15279-RD | 631..825 | 116..310 | 345 | 78.5 | Plus |
| CG15279-RA | 2110 | CG15279-RA | 210..404 | 116..310 | 345 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5407319..5407693 | 644..270 | 1875 | 100 | Minus |
| X | 23542271 | X | 5406638..5407067 | 1069..644 | 1680 | 95.8 | Minus |
| X | 23542271 | X | 5407746..5407927 | 271..90 | 910 | 100 | Minus |
| X | 23542271 | X | 5410486..5410566 | 89..9 | 405 | 100 | Minus |
| 2L | 23513712 | 2L | 14848724..14848918 | 310..116 | 345 | 78.5 | Minus |
| 2R | 25286936 | 2R | 9795678..9795850 | 144..316 | 220 | 75.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:22:26 has no hits.
UFO09923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:12 Download gff for
UFO09923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NAAT1-RA | 274..1351 | 2..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:49 Download gff for
UFO09923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NAAT1-RA | 278..1355 | 2..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:13 Download gff for
UFO09923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NAAT1-RA | 278..1355 | 2..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:13 Download gff for
UFO09923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5406631..5407067 | 644..1076 | 96 | <- | Minus |
| X | 5407320..5407692 | 271..643 | 100 | <- | Minus |
| X | 5407747..5407927 | 90..270 | 100 | <- | Minus |
| X | 5410486..5410572 | 2..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:49 Download gff for
UFO09923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5300664..5301100 | 644..1076 | 96 | <- | Minus |
| arm_X | 5301353..5301725 | 271..643 | 100 | <- | Minus |
| arm_X | 5301780..5301960 | 90..270 | 100 | <- | Minus |
| arm_X | 5304519..5304605 | 2..89 | 95 | | Minus |
