UFO09924.5prime Sequence
1102 bp (949 high quality bases) assembled on 2011-10-17
> UFO09924.5prime
CAGTCGACATGACCACCGCCGCCTCCACATCGCAGCATGCGACATCGTCC
TCCACAATGATGGCGGGCTCTGGATCCTTGGCGACCTCGTCGTCCGCCGC
TGCCCCCACAACCACGCCCAGCAGCTCGGCCGTTCGCGCCCTGGCCATGG
AGTACAAGTCGCTGCAGGAAGAGCCGGTGGAGGGATTCCGCGTCAAGCTG
ATCAACGACGACAATCTGTTCGAATGGGAGGTGGCAATCTTCGGGCCACC
GGACACCCTCTACCAGGGCGGCTACTTCAAGGCGCACATGAAGTTCCCGC
ACGACTATCCATACTCACCGCCATCCATACGCTTCCTGACGAAGGTCTGG
CATCCGAATGTTTACGAGAACGGTGATCTGTGCATATCCATACTACATCC
GCCGGTGGATGATCCGCAGAGTGGCGAGCTGCCCTGCGAACGCTGGAATC
CCACGCAGAATGTGCGCACCATCCTGCTGTCGGTCATATCGCTGCTCAAT
GAGCCGAACACATTCTCGCCGGCCAACGTGGACGCCTCGGTCATGTACCG
CCGATGGCGGGACTCACAGGGTAAGGACAATGAGTATCCAAACATCATAC
GAAAACAGGCACTGGCCGCCAATGCCGAGGCCAAGCGGGAGGGCATTGTG
GTTCCGATGACCCTGGAGGACTACTGCCTGAAGCCCACGCGCAAGCCCAC
AACGGAGTCTGGCCTGATGCCAACTTCTACGATGATGATTTCGATCTGGA
GACGGAGGATGATCTGCCATCTGATGATGACTTCGATGAGGACGACGACG
ATGATGAGGACGAGGATGAAGATGAGGACAGTGCCACGGCGCCGATTAGC
AAAAATAATGGAAGGCAGCAGCAAGTGCAAGAACACCGGGCTGGTCAGAG
AGGCGGCCGCCGCGGAGCGGACGATGCCGAATCCGCTGATGACACGGGCA
AGGGCGAGACCACAGCAAGCTTTCTAGATCAATTCGTTTGGCCGCGCGGG
CCAAGGTAAGGTGTCATATTCTTAATCATATCCTTAATCTTATCCCAACT
AGTCTAGGGAAATCCCTGTTATGAACTACGGCCTGGGATTCCTACAATAA
AA
UFO09924.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7656-RE | 1234 | CG7656-RE | 153..1109 | 9..964 | 4670 | 99.4 | Plus |
| CG7656-RD | 1410 | CG7656-RD | 303..1259 | 9..964 | 4670 | 99.4 | Plus |
| CG7656-RF | 2027 | CG7656-RF | 303..1253 | 9..964 | 4570 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15587004..15587565 | 570..9 | 2810 | 100 | Minus |
| 3L | 28110227 | 3L | 15586205..15586603 | 964..567 | 1805 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:22:34 has no hits.
UFO09924.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:13 Download gff for
UFO09924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RE | 171..1130 | 9..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:54 Download gff for
UFO09924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 303..1262 | 9..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:18 Download gff for
UFO09924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 303..1262 | 9..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:18 Download gff for
UFO09924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15586202..15586600 | 570..968 | 98 | <- | Minus |
| 3L | 15587005..15587565 | 9..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:54 Download gff for
UFO09924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15579302..15579700 | 570..968 | 98 | <- | Minus |
| arm_3L | 15580105..15580665 | 9..569 | 100 | | Minus |
