UFO09926.5prime Sequence
1080 bp (958 high quality bases) assembled on 2011-10-17
> UFO09926.5prime
CAGTCGACATGCACATATGCATATACATGTCTATGTATAAGGGTGGTCGG
ACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATC
TATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGG
AGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAAGA
TCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGAGT
CAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAATAC
CAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATATTA
CTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGGAA
CTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTTGA
CATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAAAA
GTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACAAG
GCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACCTT
TACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTTGG
GGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAAACTGCG
CTGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGTT
CCAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCTT
CATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGGA
AAAAACTATATCCCATTTGTTTCGGCGGTCTGGGGACACTGTGAAATACA
ATGCGTTACATTGGTGGATTAGATCCCGGACCCTTGCCCCTAATGGATTC
TTGGCCGAAGAACATTTCGTCAAAAATGGTCGCACAATCCTTGGAGGAGC
ACATTCAACAGCTTCCACTTCCTTTATCATGAAAACATATTATTGTTTAA
CCGATAAAGCAGGCTTTCTGACATCGTTGG
UFO09926.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 1525 | CG2944-RM | 139..1181 | 9..1050 | 4915 | 98.5 | Plus |
| gus-RK | 1813 | CG2944-RK | 308..1350 | 9..1050 | 4915 | 98.5 | Plus |
| gus-RI | 2040 | CG2944-RI | 308..1354 | 9..1050 | 4865 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121652 | 925..35 | 4295 | 99.6 | Minus |
| 2R | 25286936 | 2R | 5117686..5117802 | 1041..926 | 305 | 91.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:23:59 has no hits.
UFO09926.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:19 Download gff for
UFO09926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RE | 306..1353 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:41 Download gff for
UFO09926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 303..1350 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:46 Download gff for
UFO09926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 303..1350 | 1..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:46 Download gff for
UFO09926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5120763..5121652 | 35..925 | 99 | <- | Minus |
| 2R | 5121773..5121803 | 1..34 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:41 Download gff for
UFO09926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1008268..1009157 | 35..925 | 99 | <- | Minus |
| arm_2R | 1009278..1009308 | 1..34 | 91 | | Minus |
