UFO09928.5prime Sequence
1099 bp (950 high quality bases) assembled on 2011-10-17
> UFO09928.5prime
CAGTCGACATGAAACAGCGAAATCTTAGGAATAATAAAGCACTCAAACGC
CTCCAGCAGCCAGATAATAAAAATCTAAATTGTTGCTTGAGTAAACGTTG
CAACTATGAAAATATCTGGCAGCATTTCAATAGCAATGCCACCCTTGAGG
AAATTCGACATGCGGCCGCGCGTATTTGCCGAGACTATCTAACTGGGCCC
TGGAAAGTGGTTACTCCGGAGAGTTTGGTAGTGAAGCGCATAAGTGGCGG
GCTGTCAAATTTCTTGTATTACGTAAGCCTTCCCGATTTAAATGACTACG
ATGAGCTGGACGAACAGAAACAGCAGCAGGAAGACATCATAGGGGCCACC
GCAACTGTGACCAATAGAAGCGGAGTTTTCATACACGACGATGAGTCGGC
TGCCAAGGCGGTGGGCGTAACATTGATGGCGAGGGAATTAATAAATAACG
ATGACGTCGCCGACGCAGCTCCTGGCGCCACACAAGCACACAAACGTCAG
CGATGCGATAGTAATAGTCGCGAATGCAGTTCTTCGAAACGATTGCACGC
CCCCAAGCAGCAACCCCGTGAGGTCCTTCTGCGAATATATGGTCAGACCC
ATGGTGATCACGCCCTGGAGAGCATGATTACCGAGTCCGTGGTTTTCGCC
CTTCTCAGTGAACGGAACTATGGGCCCAAACTGCACGGAATCTTTCCGGG
CGGACGTATTGAACAATATATTCCGGCACGCGCTTTGACCACAGCAGAAT
TGGGAGAGCAACGAATATTAAAGAGAGTGGCTGAGAAAATGGGTGAGATC
CACAGTCTTAATATACCCATGTCTAAGAGCCCGATTGGATTTGGAATTGT
ATGCAGCGTTGGGTTTCCCGGTTTAGAGAGCATTGTTAACGGCAGTGTCC
AAACGAATCAAAAATCTTCGGTACTGAAGAGGCAAATGGAATTGATGCGA
CTCTTGTGATCACTTTCAGAAGATGGCCTTGAATTAGTCGATTTATCGAT
GGAAGAGAAATATTATCCAGTGTGGTTCTGTCATATGAATCTGCAAGAAG
GTAATATTCTGATGCCACACCGTCAGCCTGGTCAAACCGACGACCCCCG
UFO09928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-RF | 2561 | CG2201-RF | 150..1226 | 8..1090 | 4860 | 97.3 | Plus |
| CG2201-RB | 2027 | CG2201-RB | 150..1226 | 8..1090 | 4860 | 97.3 | Plus |
| CG2201-RC | 1814 | CG2201-RC | 66..1013 | 137..1090 | 4215 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21617492..21617823 | 574..243 | 1660 | 100 | Minus |
| 2L | 23513712 | 2L | 21616236..21616574 | 1069..725 | 1105 | 91.3 | Minus |
| 2L | 23513712 | 2L | 21617279..21617434 | 726..571 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 21618495..21618625 | 138..8 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 21618004..21618110 | 244..138 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:24:14 has no hits.
UFO09928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:20 Download gff for
UFO09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RB | 143..1089 | 1..949 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:48 Download gff for
UFO09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RB | 145..1091 | 1..949 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:52 Download gff for
UFO09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RB | 145..1091 | 1..949 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:52 Download gff for
UFO09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21618496..21618630 | 1..137 | 97 | | Minus |
| 2L | 21616350..21616573 | 726..949 | 98 | <- | Minus |
| 2L | 21617280..21617432 | 573..725 | 100 | <- | Minus |
| 2L | 21617494..21617821 | 245..572 | 100 | <- | Minus |
| 2L | 21618004..21618110 | 138..244 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:48 Download gff for
UFO09928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21616350..21616573 | 726..949 | 98 | <- | Minus |
| arm_2L | 21617280..21617432 | 573..725 | 100 | <- | Minus |
| arm_2L | 21617494..21617821 | 245..572 | 100 | <- | Minus |
| arm_2L | 21618004..21618110 | 138..244 | 100 | <- | Minus |
| arm_2L | 21618496..21618630 | 1..137 | 97 | | Minus |
