UFO09931.5prime Sequence
1071 bp (976 high quality bases) assembled on 2011-10-17
> UFO09931.5prime
CAGTCGACATGAAGTACAAATCGTATTTGCTAGTTTCTTCTATAATTGCC
AACCAACTTCTCTATGGACTGGCCGTTTTACTTGAACCCAATTGTGGCCA
AATACCTTTTCGAATGCGCATTTTTGGCGGAATGGATGCTGGGTTAGTCT
CAACACCATGGATGGCTTTTCTGCACAATCACTTACAGTTCCTGTGCGGC
GGCTCACTTATCACGAGCGAATTCGTGCTTACCGCTGCGCATTGTGTGAT
GCCCACTCCGAAAAACTTAACGGTTCGACTGGGAGAGTATGATTGGACAA
GACAAATGGATTCCATTAACCCGAAACACAGGCACAGGGAATACATGGTA
ACTAGAATCTATACGCATCCCAGTTATAGGTCGATTGCAGCCTATGATAT
AGCATTACTGAAACTGAATCAGACAGTTGAATATACAGTTGCCATTCGTC
CCATATGTTTGGTATTGCCTGAAAATTTCCACGAATGGTATTGGCTTGTG
GATTCTGTAGAAGACTTCACTCTTACCGGCTGGGGTGCGACCAAAACTGA
ACCTGTTAGCCAAGTACTCCAATCCGCCAATCTCACCCAGATCGATCGGG
GAACCTGTCACGATCGGTACGGACATTCTGTCGATCATACCCACATCTGT
GCCGGAAGTAGCAAATCATTTGCCTGCGTCGGGGACTCTGGCAGTCCACT
TGCAATGAAGGTGGTGCATAATCGAAGATACATTCACGCTCAAGTGGGAA
TTGTTAGCCGTGGGCCCAAGAATTGTGATGGAGTTACTGTCTTCACAAAC
GTTGTAAGCTTCACCGAGTGGATTTTCAAGACCACTTTATACGACGCGAA
ATACATGTCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATATTCATAATCACAACTAGGCT
TAGGAGATCCTGGTCATGACTAGTGCTTGATTCCTCACCATAAAAAACGC
CCGGCGGCACCGAGCGTTCTGAACAATCCAGATGAGTCTGAGTCATACTG
GATTCTAATCACGGAGTCCAG
UFO09931.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33459-RA | 914 | CG33459-RA | 12..863 | 9..860 | 4215 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16488705..16489131 | 434..860 | 2120 | 99.8 | Plus |
| 2R | 25286936 | 2R | 16488064..16488274 | 9..219 | 1025 | 99.1 | Plus |
| 2R | 25286936 | 2R | 16488470..16488639 | 269..438 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 16488354..16488403 | 219..268 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:24:32 has no hits.
UFO09931.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:22 Download gff for
UFO09931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33459-RA | 7..866 | 4..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:57 Download gff for
UFO09931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33459-RA | 7..866 | 4..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:00 Download gff for
UFO09931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33459-RA | 7..866 | 4..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:00 Download gff for
UFO09931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16488059..16488274 | 4..219 | 98 | -> | Plus |
| 2R | 16488355..16488403 | 220..268 | 100 | -> | Plus |
| 2R | 16488470..16488639 | 269..438 | 100 | -> | Plus |
| 2R | 16488710..16489134 | 439..864 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:57 Download gff for
UFO09931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12375564..12375779 | 4..219 | 98 | -> | Plus |
| arm_2R | 12375860..12375908 | 220..268 | 100 | -> | Plus |
| arm_2R | 12375975..12376144 | 269..438 | 100 | -> | Plus |
| arm_2R | 12376215..12376639 | 439..864 | 99 | == | Plus |
