UFO09932.5prime Sequence
882 bp (880 high quality bases) assembled on 2011-10-17
> UFO09932.5prime
CAGTCGACATGTGTGACGATGAAGTTGCTGCTCTGGTCGTTGACAATGGC
TCCGGCATGTGCAAGGCCGGTTTCGCCGGTGATGACGCTCCCCGTGCCGT
CTTCCCCTCCATCGTCGGTCGTCCACGCCACCAGGGTGTGATGGTCGGTA
TGGGCCAGAAGGACTCGTACGTCGGTGATGAGGCCCAGTCCAAGCGTGGT
ATCCTCACCCTGAAATACCCCATCGAGCACGGTATCATCACCAACTGGGA
TGATATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTGTTG
CCCCCGAGGAGCACCCCGTCCTGCTGACTGAGGCCCCCCTGAACCCCAAG
GCTAACCGCGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACTCGCC
CGCCATGTACGTCGCCATCCAGGCCGTGCTCTCCCTGTACGCCTCCGGTC
GTACCACCGGTATCGTTCTGGACTCCGGTGATGGTGTCTCCCACACCGTC
CCCATCTATGAGGGTTATGCTCTGCCCCATGCCATCCTCCGTCTGGATCT
GGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGACCGAGCGCG
GCTACTCTTTCACCACCACCGCTGAGCGTGAAATTGTCCGTGACATCAAG
GAGAAGTTGTGCTATGTTGCCCTGGACTTCGAGCAGGAGATGGCCACCGC
CGCCGCCTCCACCTCCCTGGAGAAGTCGTACGAGCTTCCCGACGGACAGG
TGATCACCATCGGCAACGAGCGTTTCCGTTGCCCCGAGTCCCTGTTCCAG
CCTTCCTTCCTGGGAATGGAATCCTGCGGCATCCACGAGACCGTCTACAA
CTCCATCATGAAGTGCCGATGTGGATATCCGT
UFO09932.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act57B-RA | 1724 | CG10067-RA | 97..969 | 9..882 | 4345 | 99.9 | Plus |
| Act87E-RC | 1853 | CG18290-RC | 82..954 | 9..882 | 3220 | 91.3 | Plus |
| Act87E-RB | 1643 | CG18290-RB | 158..1030 | 9..882 | 3220 | 91.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20944843..20945676 | 48..882 | 4125 | 99.9 | Plus |
| X | 23542271 | X | 5902698..5903570 | 9..882 | 3195 | 91.3 | Plus |
| 3R | 32079331 | 3R | 13426604..13427476 | 9..882 | 3195 | 91.3 | Plus |
| 2R | 25286936 | 2R | 6014544..6015400 | 865..9 | 2380 | 85.2 | Minus |
| 2R | 25286936 | 2R | 20944117..20944157 | 9..49 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:24:43 has no hits.
UFO09932.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:23 Download gff for
UFO09932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act57B-RA | 90..962 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:02 Download gff for
UFO09932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act57B-RA | 97..969 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:04 Download gff for
UFO09932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act57B-RA | 97..969 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:04 Download gff for
UFO09932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20944117..20944156 | 9..48 | 100 | -> | Plus |
| 2R | 20944844..20945676 | 49..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:02 Download gff for
UFO09932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16831622..16831661 | 9..48 | 100 | -> | Plus |
| arm_2R | 16832349..16833181 | 49..882 | 99 | | Plus |
