UFO09933.5prime Sequence
1045 bp (961 high quality bases) assembled on 2011-10-17
> UFO09933.5prime
CAGTCGACATGTCGTGCGCAAAGCCGCATATTTTGATTATTGAACCGTTT
TACGGGGGCAGTCACAAACAGCTGATCGGCGCACTGATCGAGGGTCTCAA
CCATGGCGACAGCGAGATATTCAGCCTTCCCGCCAAGAAATGGCACTGGC
GAGCACGCACCTCTGCCCTCCACTTCGCCCAGCTGATTCCGCGCGATCAC
GCATTCCGGGTGCTTTTCGCCAGCTCCGTGCTCAGCCTGGCCGAGCTGAT
TGGTCTGCGTCCGGATCTGGCCGCTTGCCGGAAGATCGTCTACTTCCACG
AGAACCAGCTGATCTATCCGGTGCGCGAGGTGAAGCAGCGCGATTGTCAA
TACGGTTTCAATGAGATACTCTCCTGTCTTGCCGCAGACATGGTGCTCTT
CAATTCCCAATTCAACTGCAACTCGTTTTTGGATAATGTTCAGCCCTTTC
TGAATATGCAGCCAGACTTTAAAATCAAGCATATTCGCGAGCAAATCGAG
AAGAAATGCCAAGTGCTGTACTTTCCCGTCAATTTCGAACGGTTTCCCAT
TCGGAAGGAGTGCGTAAAGGGGGAGACTGCTGAGGATCTGGATGAGAAGT
GCATCCATCTTATTTGGCCACATCGCTGGGAGCACGATAAGAATCCCAAA
CTACTGGTGGATACGCTCTGTCAGCTCCATGAGCGACAAGTGGACTTCAA
GGTGACTATTTGTGGCGAGAGTTACCAGGAGATACCGGAGGAATTCGAGC
ATATACAGGAGAAACTGGGCAGCAAGCTGGTGAACTTTGGCCATCTGGAG
CGTGAAGAGTACTTGAAGACCCTGCTGACTGGGGACATTGTGATATCAAC
TGCCGACCATGAGTTTTTTGGAGTAGCATGCTGGAAGCCGCTTTCTGCGG
CTGTTATCCCATTGCGCCAACAAATTGGTCTACCCGGAAATCTTACCCAA
AGGAAAACCTCTACAACACCTTCCATGCCGCTGACGAAGAAGCTCTACAA
CTTTTGAAGAATGCCGAGGGTCTTTTCGCCAGCCAGCGCGATCTC
UFO09933.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15914-RA | 1422 | CG15914-RA | 25..1058 | 8..1043 | 4965 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15853941..15854590 | 376..1025 | 3000 | 98.8 | Plus |
| X | 23542271 | X | 15853605..15853888 | 93..376 | 1420 | 100 | Plus |
| X | 23542271 | X | 15853445..15853532 | 8..95 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:24:53 has no hits.
UFO09933.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:23 Download gff for
UFO09933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15914-RA | 17..1058 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:08 Download gff for
UFO09933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15914-RA | 17..1058 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:07 Download gff for
UFO09933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15914-RA | 17..1058 | 1..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:07 Download gff for
UFO09933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15853606..15853888 | 94..376 | 100 | -> | Plus |
| X | 15853437..15853530 | 1..93 | 96 | -> | Plus |
| X | 15853942..15854606 | 377..1045 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:08 Download gff for
UFO09933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15747470..15747563 | 1..93 | 96 | -> | Plus |
| arm_X | 15747639..15747921 | 94..376 | 100 | -> | Plus |
| arm_X | 15747975..15748639 | 377..1045 | 98 | | Plus |
