UFO09934.5prime Sequence
1069 bp (975 high quality bases) assembled on 2011-10-17
> UFO09934.5prime
CAGTCGACATGTATCCAGATGGACAACAGTCACAGTGGACCCCCTCGCCC
ACTCGGCCTCAGAGTCCCTCTCAGGCGCAGACTAGCTTCGACACGCTCAC
ATCACCACCAGCGCCCGGCTCGTCGGTCAATCCCACCGCCGTCACCAGCC
CAAGTGCCCAGAATGTGGCCGCTGGTGGAGCAACTGTGGCCGGTGCAGCA
GCAACTGCCGCCCAGGTGGCCTCCGCCTTGGGTGCCACCACCGGCAGCGT
GACGCCAGCAATTGCCACCGCAACGCCAGCCACGCAGCCGGATATGCCCG
TCTTTACGTGTCCACGACGCCCGAATCTCGGACGAGAGGGTCGCCCGATT
GTGCTGCGCGCCAATCACTTCCAGGTGACAATGCCGCGTGGCTATGTGCA
TCACTATGACATCAATATACAGCCGGACAAGTGTCCGCGAAAGGTGAACC
GTGAGATTATCGAGACTATGGTGCATGCCTATAGCAAGATCTTCGGAGTG
CTCAAGCCGGTGTTCGATGGTCGCAACAATCTGTATACCCGCGATCCCCT
GCCCATTGGCAACGAGCGTCTAGAGCTGGAGGTTACTCTACCCGGCGAGG
GCAAAGATCGAATCTTTCGCGTGACGATCAAGTGGCAGGCTCAGGTCTCG
CTCTTCAATTTGGAGGAAGCTCTCGAAGGCCGCACGCGGCAGATACCCTA
TGATGCCATTTTGGCGCTCGATGTGGTCATGCGCCATCTGCCCAGCATGA
CGTACACGCCAGTGGGACGTAGCTTCTTCAGTTCCCCGGAGGGTTACTAC
CATCCCCTGTGTGGTGGACGCGAGGTTTGGTTCGGTTTCCATCAGAGCGT
AAGCCCTCGCAGTGAAGATGATGCTCAATATCGATGTCTCGGCCACCGCT
TTCTACAAGCTCAACCAGTCATTGACTTCATGTGCGAGTGCTGGACATTC
GCGACATCAACGAGCAGCGCAAACCGCTTCACCGATCGCAGCGCGTCAAG
TTCACGAAAGAAGATCAGGTTGAAGATCGAGAATCACCCCCTGGCGCAGA
ATGCGTCCGCCAAAGTAAT
UFO09934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO1-RB | 5738 | CG6671-RB | 321..1362 | 7..1043 | 4900 | 98.6 | Plus |
| AGO1-RD | 7888 | CG6671-RD | 470..1490 | 28..1043 | 4810 | 98.6 | Plus |
| AGO1-RA | 3481 | CG6671-RA | 213..1233 | 28..1043 | 4810 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13950132..13950917 | 886..103 | 3815 | 99.6 | Minus |
| 2R | 25286936 | 2R | 13949949..13950073 | 1008..886 | 435 | 93.6 | Minus |
| 2R | 25286936 | 2R | 13951614..13951688 | 102..28 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:23:41 has no hits.
UFO09934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:18 Download gff for
UFO09934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO1-RB | 287..1341 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:32 Download gff for
UFO09934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO1-RB | 316..1370 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:39 Download gff for
UFO09934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO1-RB | 316..1370 | 1..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:39 Download gff for
UFO09934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13949905..13950072 | 887..1050 | 91 | <- | Minus |
| 2R | 13950132..13950917 | 103..886 | 99 | <- | Minus |
| 2R | 13951614..13951688 | 28..102 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:32 Download gff for
UFO09934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9837410..9837577 | 887..1050 | 91 | <- | Minus |
| arm_2R | 9837637..9838422 | 103..886 | 99 | <- | Minus |
| arm_2R | 9839119..9839193 | 28..102 | 100 | <- | Minus |
