UFO09936.5prime Sequence
1090 bp (987 high quality bases) assembled on 2011-10-17
> UFO09936.5prime
CAGTCGACATGGAACTGCGGAGCAAACATCGCATAATGGGTGCTCCAGTG
GGCACAGCGAACACAAAAGGCTGGAGTCCTAATCAATCCACTCTGCCCGT
GGAGCTCAGTAAATTTGAAACCCAATTGCTTTTGGATGAGAATATAGCAA
AGTTAGTTGATAAATCCAAAGATCTAAAGGCTAAACCCACTGCCGAGAAA
CTTGAGGAGTGCAAGGCGGATTTTGAATCCCGGTTACTGGGACAGGAGGA
AGCATTGAAAACGGAGAAACTACGGGAAACTGAACGATACATGGATAAGA
TTCTGACGGGAAAACGCAAGAAGTTGCTCAAGCAGGGCAAAAATGAATTG
GCTGCCGCTCTGACTGATAAGGATGTACTATTGGAGATGTCTGTGAATTT
CAAATTCGATCGCCAAAATGCCTTGCTGGAGGTGCATTGTGAACATCCCA
CGGATCACTCTGCGCAAATAGTTACCGGTCCCATTGTGCACACCAATTCC
CTGAAATACCGCGTTTTCAAAGATCTGTGGAGGCGCGGAAAGTACGTGAC
TTCCGGCGATGCATTTGGAGCGGACTTTCTGGTTTACCCCGGCGATCCCA
TGATCTACCACGCCTCCCACATTGTAATTTTGCACGAGCAACCTGTAATT
AAGCCCCTGGAACTGATAGCAAAAGTTCGTCTATCGGTAATTGTCAACAA
AAGCTGCGTTTTCGCCTACGAGATGGAAAATAATGAGGAAGAATACATTA
CCAAACGGTCGCATGGTGCAATCTTGGAAAAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCATAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAAATCCG
ATGGAGTTCTGAGTCATTACTGGATTCTATCAACAGGAGTCAGCGAGCTT
CGATATCAAATTACGCCCCCGCCCTGCCCACTCATCGCAGTACTGTGTAA
TTCATTAAGGCATCTGCGAACTTGAGCCATCCAAAACGGC
UFO09936.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33260-RC | 902 | CG33260-RC | 65..840 | 7..781 | 3855 | 99.9 | Plus |
| Trl-RF | 2613 | CG33261-RF | 1..406 | 377..781 | 2005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14760582..14760904 | 781..460 | 1565 | 99.7 | Minus |
| 3L | 28110227 | 3L | 14761292..14761552 | 351..91 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 14760967..14761075 | 459..351 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 14761640..14761723 | 90..7 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:23:50 has no hits.
UFO09936.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:18 Download gff for
UFO09936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 61..843 | 1..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:36 Download gff for
UFO09936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 61..840 | 1..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:43 Download gff for
UFO09936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33260-RC | 61..840 | 1..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:43 Download gff for
UFO09936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14760582..14760904 | 460..781 | 99 | <- | Minus |
| 3L | 14760967..14761074 | 352..459 | 100 | <- | Minus |
| 3L | 14761292..14761552 | 91..351 | 100 | <- | Minus |
| 3L | 14761640..14761729 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:36 Download gff for
UFO09936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14753682..14754004 | 460..781 | 99 | <- | Minus |
| arm_3L | 14754067..14754174 | 352..459 | 100 | <- | Minus |
| arm_3L | 14754392..14754652 | 91..351 | 100 | <- | Minus |
| arm_3L | 14754740..14754829 | 1..90 | 96 | | Minus |
