UFO09938.5prime Sequence
1104 bp (990 high quality bases) assembled on 2011-10-17
> UFO09938.5prime
CAGTCGACATGATGGAGTTCGGGAAATCGTCGGATCACTCCCAGCACAGC
GCTTCCGAGGCGTCGGCGGACTCCGGCAGCCTGGCAAACAGCGATCTGGC
CGTCACGCCCACCAAGCGGGAGCGCCGCAAGTCGCCGGCCACCAGTTCGG
ACAACAACAGCACCAGCGTCCAACCGCCAATGTCGCCGTCGTCCTCGGTG
GCGGACACCACCTTTGAGCCCACCATCGACATGATGGTCAACGACTTTGA
CGACGAGGCCACGCTGAACGAGGAGGAGGCTCTGGCGGACATGGAGGCGC
ACAGTGCCGAGGACGAGATCGCCACGCTGCGCGAGGAGAGCGAGATGCCC
ATCGAGGAGCTGCTGGCCAAATATGGCGGGACAGCGGCTTCGCCGGCAAT
GAGCAGCTCGAACCGTTCCGGCAGCAGTTCACGACGTGCACGTAGGGCCA
CAAAGCGCCAGTACCAGGAACTGGACACGGAGATGGCTCACACGTCGACC
TCCACTTCGAGCAGCACATCGCAACTGGAGAAACACGACGGCATAGACCA
GGAGGAGGAACCCAAGGAGGAGGCCGATAAGCTAGCATCACCCCCAGAAT
CAGGAGAAGCTTCGTCCGTGGACACGGAGGATGCGCAAAAGTATGAGGGG
ATCAAGAAGCAGCATCGCTCACATTTGCTGGACCTGTATCCAGATGAATC
CTTCGTCGATCTGGCGCCCACATGCGGAGAGGAGACGGAAAGATTCACTC
CACTGCAAACACTGTTCGATGAAGTGGAGGCCGAGGAGGAGGAGGAAAGC
GAATCCGAGTTGGACGATGCTCGGAAGATAATAATGGTGGGTCACGACTA
TCAGCTGAGATCCCAGAGGGGCTGTCGCAATATGGCGATATATTGCCATA
TGAGAACGAGGATCAGTTGATCTGGGAGCCCAGCCAAGTCAGCGAGCGCG
AGGTGGAGGATATCTGGCCAAGAATACAGGAAACCCGATCGAATGTTCCG
CCGATGACGGTCAAGAGACTACGCGGGGCGGAGAGGCCAGCTACAGGGTG
CTACTATCGACGCCGCTCCATTACAGCTCAGGCCAGCTTCGAGGGTCCGC
ATGC
UFO09938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1620-RC | 2204 | CG1620-RC | 87..1192 | 9..1104 | 5005 | 97.7 | Plus |
| CG1620-RB | 2272 | CG1620-RB | 87..1192 | 9..1104 | 5005 | 97.7 | Plus |
| CG1620-RA | 2529 | CG1620-RA | 206..1311 | 9..1104 | 5005 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7495526..7496261 | 744..9 | 3680 | 100 | Minus |
| 2R | 25286936 | 2R | 7495174..7495461 | 1030..745 | 1140 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:25:33 has no hits.
UFO09938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:26 Download gff for
UFO09938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RB | 206..1301 | 9..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:30 Download gff for
UFO09938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1301 | 9..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:23 Download gff for
UFO09938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1301 | 9..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:23 Download gff for
UFO09938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7495102..7495461 | 745..1095 | 93 | <- | Minus |
| 2R | 7495526..7496261 | 9..744 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:30 Download gff for
UFO09938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3382607..3382966 | 745..1095 | 93 | <- | Minus |
| arm_2R | 3383031..3383766 | 9..744 | 100 | | Minus |
