UFO09939.5prime Sequence
1096 bp (980 high quality bases) assembled on 2011-10-17
> UFO09939.5prime
CAGTCGACATGAACCTCGAGCAGCAGGGGATGGATCCGCAAGGGGTGGAA
AACCAGCAGGAAATCGTCCAGGCAGCCGAAGGAGAACAGCAGTTGCAAAG
TTGCTGTAAGGTCTTCAAAATGAAGGGATCGACGCTGGACAAAATCTCCG
CCTTCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCCTGGGCTGC
ATGGGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTGCAGATTGT
GCTGAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTTTGGCTGCG
TCTCCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCTACATCTAC
GAGATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCCCAGATGCT
GGGCGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCCCTCGCCCA
CACTTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACACCAGCGTA
ACCACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCCATCCTGGT
CATCGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTTCCATGACT
CCGTGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCTGCGCTGCC
GGTCCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTCGCCCCCGC
CCTGTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCTGGCCCCGC
TGAGCTCCTCCGCCATCACCGCCTACGCCTACAAGTCGTCTTCCGCCGCG
AGGTGGTTGAGGCGGAGATCACCTCCAATGAGAAGCTGCGGCACTGGAGG
ACGTCCAGCTGTCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGAGATCTGTCATGACTAGTGCTGATCTCACCAATAAAAACGCTGCG
CACGACGTTCTGACAATCAGAATGGAGTTCTTGAGTCATTACTGATCTAT
CAACGGAGTCAGCGAGCTCGAAATTCATTACGCCCCGCCTGCATCA
UFO09939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-RE | 1183 | CG4019-RE | 82..939 | 9..864 | 4240 | 99.8 | Plus |
| CG4019-RF | 1271 | CG4019-RF | 260..1027 | 99..864 | 3790 | 99.7 | Plus |
| CG4019-RD | 1128 | CG4019-RD | 117..884 | 99..864 | 3790 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23608131..23608683 | 651..99 | 2765 | 100 | Minus |
| 2R | 25286936 | 2R | 23607836..23608051 | 864..651 | 980 | 99.1 | Minus |
| 2R | 25286936 | 2R | 23608931..23609022 | 100..9 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 23604625..23604800 | 427..252 | 400 | 81.8 | Minus |
| 2R | 25286936 | 2R | 23606358..23606443 | 342..257 | 205 | 82.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:25:42 has no hits.
UFO09939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:27 Download gff for
UFO09939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RD | 78..849 | 99..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:34 Download gff for
UFO09939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RE | 75..943 | 1..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:26 Download gff for
UFO09939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RE | 75..943 | 1..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:26 Download gff for
UFO09939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23608132..23608681 | 101..650 | 100 | <- | Minus |
| 2R | 23608931..23609027 | 1..100 | 97 | | Minus |
| 2R | 23607832..23608051 | 651..869 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:34 Download gff for
UFO09939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19495355..19495574 | 651..869 | 98 | <- | Minus |
| arm_2R | 19495655..19496204 | 101..650 | 100 | <- | Minus |
| arm_2R | 19496454..19496550 | 1..100 | 97 | | Minus |
