UFO09940.5prime Sequence
1120 bp (995 high quality bases) assembled on 2011-10-17
> UFO09940.5prime
CAGTCGACATGGGGAATATATCAGCATCCATAACATCACAAAGCAAAATG
GGCAAGGATTTCGATGCTGTTGGATTCGTCAAGGATTTCGCTGCCGGAGG
CATCTCCGCAGCTGTCTCCAAGACTGCCGTCGCCCCCATTGAGCGTGTGA
AACTGCTCCTGCAGGTTCAGCACATCTCGAAACAAATCAGCCCCGACAAG
CAGTACAAGGGCATGGTTGATTGCTTTATCCGCATTCCAAAGGAGCAGGG
ATTCTCGTCCTTCTGGCGCGGCAACTTGGCCAACGTCATCAGATACTTCC
CAACCCAGGCTCTGAACTTTGCCTTCAAGGACAAGTACAAGCAGGTCTTC
CTGGGTGGCGTGGACAAGAACACCCAGTTCTGGCGCTACTTCGCCGGCAA
CTTGGCCTCCGGTGGTGCCGCTGGTGCTACCTCTCTGTGCTTTGTCTACC
CCTTGGACTTTGCCCGTACTCGCTTGGCTGCTGATACTGGCAAGGGTGGT
CAGCGTGAATTCACCGGTCTGGGCAACTGCTTGACCAAGATCTTCAAGAG
CGACGGCATCGTTGGATTGTACCGTGGTTTCGGAGTGTCCGTGCAGGGCA
TCATCATCTACCGTGCCGCCTACTTCGGCTTCTACGATACCGCTCGCGGT
ATGCTGCCCGACCCCAAGAACACACCCATCTACATCAGCTGGGCCATCGC
CCAGGTTGTGACAACCGTCGCTGGCATCGTGTCCTATCCCTTCGATACCG
TGCGTCGTCGCATGATGATGCAGTCTGGTCGCAAGGCCACCGAGGTCATC
TACAAGAACACACTGCACTGCTGGGCCACCATCGCCAAGCAGGAGGGCAC
CGGTGCCTTCTTCAAGGGCGCCTTCTCAACATTCTCAGAGGAACTGGTGG
CGCTTTCGTGCTTGTGTTGTACGATGAGATCAAGAAGTCTTGCCAGCTTT
CTAGACCATTCGTTTGGCCGGCCGGCCCAGTAAGTGTCATAATCATAATC
ATAATCATATCATAATCCACACTAGCTAGGAAATCCTGTCATGAACAAGG
GCCTTGGAATCCCAACCAAATAAAAACGCTCGGCGGCACGACGTCGGAAC
AATTCCGAATGGAATTCTGA
UFO09940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-RD | 1853 | CG16944-RD | 186..1122 | 8..942 | 4635 | 99.8 | Plus |
| sesB-RC | 1747 | CG16944-RC | 180..1116 | 8..942 | 4635 | 99.8 | Plus |
| sesB-RE | 1685 | CG16944-RE | 151..1054 | 41..942 | 4470 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10781630..10782096 | 937..472 | 2285 | 99.8 | Minus |
| X | 23542271 | X | 10782378..10782682 | 346..42 | 1525 | 100 | Minus |
| X | 23542271 | X | 10782173..10782302 | 472..343 | 650 | 100 | Minus |
| X | 23542271 | X | 10779296..10779600 | 872..568 | 490 | 77.4 | Minus |
| X | 23542271 | X | 10780210..10780337 | 331..204 | 445 | 89.8 | Minus |
| X | 23542271 | X | 10780001..10780123 | 464..342 | 300 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:25:51 has no hits.
UFO09940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:27 Download gff for
UFO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RD | 177..1124 | 1..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:38 Download gff for
UFO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RC | 175..1122 | 1..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:29 Download gff for
UFO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RC | 175..1122 | 1..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:29 Download gff for
UFO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10781630..10782095 | 473..937 | 99 | <- | Minus |
| X | 10782173..10782300 | 345..472 | 100 | <- | Minus |
| X | 10782380..10782680 | 44..344 | 100 | <- | Minus |
| X | 10782777..10782817 | 1..43 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:38 Download gff for
UFO09940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10675663..10676128 | 473..937 | 99 | <- | Minus |
| arm_X | 10676206..10676333 | 345..472 | 100 | <- | Minus |
| arm_X | 10676413..10676713 | 44..344 | 100 | <- | Minus |
| arm_X | 10676810..10676850 | 1..43 | 93 | | Minus |
