UFO09941.5prime Sequence
1109 bp (992 high quality bases) assembled on 2011-10-17
> UFO09941.5prime
CAGTCGACATGTCGATATCAAAATTATTCGTGAAAGTATTCAACGAGGAT
ATATTCGAGCAGGTGGACCACGATAACCTGTATTCGGATTTGGACGATGA
CTTGGAGGGCGCTAATTGCTCGACGGTTCCGGATCCGAGACCCGCAAAGC
TCGCCGATTTATCAGTTACCAAGCAGATGCTCATAGTGCGAACCTGGTTA
GATGACAAGTTCCAGCAAATCCAGACCGACAGCAATGAAGAGATTCGGCG
CTTGTACATGGAGACAGAGAGCCGCATTGGCCCGGATCTTACCATATTCG
ATGTGGACTATACGACTACAGTGCGGGTATCCTCGGATCGCCTAGCCCTG
CGCTCCCAGGGCAGCTTCAACACGGTCCGGGCTAATTGTTGCGTGTACGG
CGGTCGCTGGATGTATGAGATCCACCTCCACACTAAGGGCGTAATGCAGA
TTGGTTGGGCCTCCAACTCCTGCCAGTTTAACGAAAACAGCGGGGTGGGA
GATACCAAGTCCAGCTATGGATACGATGGCAGCAAACAGCAGATCTGGCA
TATATCCACCAAAAAGTACGGCGACAAATGGCAGATTGGCGACGTTATTG
GCGTGACTATTGACGTGGATAAGGAAGTGATCGAATATTATCGAAATGGC
CGTTCGATGGGCGTGGCGTTCAACAAGTTGGAAAAGGGTCCGGGCATCTC
CTTCTTCGCAGCCATCTCCTTGGGCTACACGCAGGGCATCGAGGCGAACT
TTGGCAATCGTCCCTTTATGTATCCGGTATCGGGCTTCCAGCCGCTAATG
GCTCGACCTATCCTTAAGCTGCAACGGGCCAACCTGCTGATGAACTACTT
GGTCAACCTCGCTGGCATATTTTCCAAGTATAACGCCAATCTGGGATGGC
ACCAACGAATGGCGCAGATGCCCGCGTTTCACTAAAAGACCGTGTACTGC
ATATTTGCCACCTTGCTGATGAGAAGTCACATGAGATATTTGATCATATA
TCATCGAGATGTCTGCTCAGAAAGATCTTCGAGCATGACAATTACGTCGA
GAGAAACTCTACGCGTACTCATGCTGGTATCCTCTTCTGAACTAATGAGG
CACAGAATC
UFO09941.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6752-RB | 4276 | CG6752-RB | 30..1071 | 9..1041 | 4860 | 98.4 | Plus |
| CG6752-RA | 4431 | CG6752-RA | 185..1226 | 9..1041 | 4860 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15194721..15195205 | 1041..566 | 1890 | 96.9 | Minus |
| 3R | 32079331 | 3R | 15195558..15195804 | 419..173 | 1190 | 98.8 | Minus |
| 3R | 32079331 | 3R | 15195862..15196026 | 173..9 | 810 | 99.4 | Minus |
| 3R | 32079331 | 3R | 15195264..15195414 | 568..418 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:26:00 has no hits.
UFO09941.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:28 Download gff for
UFO09941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6752-RA | 177..1242 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:42 Download gff for
UFO09941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6752-RA | 177..1242 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:33 Download gff for
UFO09941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6752-RA | 177..1242 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:33 Download gff for
UFO09941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15194705..15195205 | 566..1055 | 96 | <- | Minus |
| 3R | 15195267..15195412 | 420..565 | 100 | <- | Minus |
| 3R | 15195558..15195804 | 173..419 | 98 | <- | Minus |
| 3R | 15195863..15196033 | 1..172 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:42 Download gff for
UFO09941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11020427..11020927 | 566..1055 | 96 | <- | Minus |
| arm_3R | 11020989..11021134 | 420..565 | 100 | <- | Minus |
| arm_3R | 11021280..11021526 | 173..419 | 98 | <- | Minus |
| arm_3R | 11021585..11021755 | 1..172 | 97 | | Minus |
