UFO09942.5prime Sequence
1089 bp (969 high quality bases) assembled on 2011-10-17
> UFO09942.5prime
CAGTCGACATGAGTCCGCCCCAACTTTTGAGCAAGGACTCCCCAGATATT
GAGGACCTGCTGTCGCTAAATCCGCGAGTGAAGACGCAGTGCTCCGTGGT
GCCCACCAAGCAGACGAAGGAGAACAAGAAGCACTGGAAACGCAATGCGG
ATCACGCTGCTCCGCCGTGCACCACGCTGGCCAACGACTTCTCGGACATC
AAGCACACCACATTGTCGGAGCGCGGAGCTCTAGAGGAGGCGGCCAGGTG
CCTCAAATGCGCCGATGCTCCGTGCCAAAAGTCCTGTCCCACGCAGCTGG
ACATCAAGAGCTTCATTACGAGCATTGCGAATAAGAATTTCTATGGCGCC
GCCAAGGCGATCTTCTCCGACAATCCGCTGGGTCTGACCTGCGGCATGGT
CTGTCCCACCAGCGATCTCTGCGTGGGCGGTTGCAATCTGCAGGCCTCCG
AGGCGGGACCGATTAACATTGGTGGCCTCCAGCAGTTCGCCACCGAGGTG
TTCAAGAAGATGGGCGTGCGGCAGCGGAGGACACCGCAGGCGGAGGCCAA
TCCGCTGTCGCAAAAGATCGCCCTCGTGGGCGGCGGACCGGCATCGCTGT
CGTGCGCCACCTTCCTGGCCCGTCTGGGCTATCGGGATGTGACCATCTAC
GAGCGGAGAAGCTATCTGGGTGGCCTGAGTGCCGCTGAAATTCCCCAGTA
TCGTCTGCCCATCGATGCGGTTAACTTTGAGATCGATTTGGTTCGCGATC
TGGGCGTACGCATCGAAACGGGTCGCTCGCTGGGCACCAAGGATTTGACC
ATCCAGGGACTCCTGTCCACCGGGCCATGATGCCGTCTTTGTGGGCATTG
GCCCTGCCGAACCCGAAGCTGAATCCCATTTTCGCTGGGCCTTCAGCCCA
GCAATGGTTTCTACACTTCGAAAACTTCCTGCCCTTTGTGTCGGATGGCT
CGAAACCGGTTTGTGCCGCCTGCAGCAGCGCCGGATTACCAAGCTCATGC
ATGTCATCGTTTGGTGCCGGTGATCGCTCGATGCGCCACTTCGCCTGAAT
GGGTGCTAAGCCGTGGTCGCGTCCTCGCAAGGATCCTCG
UFO09942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(r)-RC | 3399 | CG2194-RC | 221..1320 | 9..1088 | 4715 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9199170..9200075 | 959..52 | 4285 | 99.1 | Minus |
| X | 23542271 | X | 9200132..9200177 | 54..9 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:26:09 has no hits.
UFO09942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:29 Download gff for
UFO09942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(r)-RC | 210..1285 | 1..1061 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:48 Download gff for
UFO09942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(r)-RC | 210..1285 | 1..1061 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:37 Download gff for
UFO09942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(r)-RC | 214..1289 | 1..1061 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:37 Download gff for
UFO09942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9199050..9200073 | 54..1061 | 97 | <- | Minus |
| X | 9200133..9200184 | 1..53 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:48 Download gff for
UFO09942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9093083..9094106 | 54..1061 | 97 | <- | Minus |
| arm_X | 9094166..9094217 | 1..53 | 94 | | Minus |
