Clone UFO09944 Report

Search the DGRC for UFO09944

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:99
Well:44
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptl(1)G0255-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO09944.5prime Sequence

1105 bp (1003 high quality bases) assembled on 2011-10-17

> UFO09944.5prime
CAGTCGACATGGCCTCCCAGGAGTTTCGCGTGGAGAGCGACACCTTTGGC
GAACTGAAGGTGCCCGCGGATAAGTACTATGGCGCCCAAACGATGCGATC
CCAGATCAATTTCCCCATCGGCGGAGCCACCGAACGGATGCCCAAACCCG
TGGTCCAGGCCATGGGCATCCTGAAGAAGGCCGCCGCCGAGGTGAACAAG
GAGTTCGGACTGGACAGCAAGGTTAGCGAGGCGATCTCGAAGGCGGCCGA
CGATGTGATCTCTGGCAAGCTATACGACGACCACTTCCCGCTGGTCATCT
GGCAGACGGGCTCGGGCACGCAGAGCAACATGAATGTGAATGAGGTGATC
AGCAATCGTGCCATTGAGCTGCTGGGCGGCAAACTGGGCTCCAAGACGCC
CGTGCATCCCAACGATCATGTGAACAAATCGCAGAGCTCCAACGATACCT
TCCCCACCGCCATTCACATCTCGGTGGCGCTGGAGCTGAACAACAACCTT
AAGCCGGCGATTAAGACGCTGCACGATGCGCTGCGTGCCAAGTCGGAGGA
GTTCAAGGACATTATCAAGATCGGACGCACGCATACGATGGATGCGGTGC
CATTGACGCTGGGCCAAGAGTTCAGCGGCTATGCCCAGCAATTGGCCTAC
GCCCAGGAGCGCATCGATGCCTGTCTGCCGCGCGTCTATGAGCTGGCTCT
GGGCGGCACTGCTGTGGGTACGGGTCTGAACACACGCAAGGGATTCGCCG
AGAAGTGCGCTGCAAAGATCGCCGAGCTGACCAGCCTGCCCTTCGTTACC
GCGCCCAACAAGTTCGAGGCACTGGCTGCCCGCGATGCCATGGTGGAGTG
CATGGTGTGCTCAACACGATCGCCGTTAGCCTGATGAAGATTGCCAACGA
TATTCGTTTCCTTGGCTCAGACCGCGTTGCGGTTTGGGTGAGCTCTCGCT
ACGGAGACGAGCCAGGTAGCTCCATCATGCCGGGCAGTGAATCCCACGCA
ATGGCGAGTCGCTGAAAATGCTCTCCGCCAGGTGATGGGCAATCAAGGGG
GCGGTGACATCGTGGATCAATGGGAACCTCCGAGCTGATTTATTCAAGCC
TGAAT

UFO09944.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0255-RB 1668 CG4094-RB 119..1218 9..1100 5070 98.1 Plus
l(1)G0255-RA 1740 CG4094-RA 192..1290 10..1100 5065 98.1 Plus
CG4095-RA 1647 CG4095-RA 191..1235 22..1058 1985 80.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6680566..6681274 343..1045 3140 98.5 Plus
X 23542271 X 6682504..6683170 343..1003 1435 82.8 Plus
X 23542271 X 6680298..6680501 144..347 1020 100 Plus
3L 28110227 3L 11464286..11465081 944..154 1010 76 Minus
X 23542271 X 6679825..6679957 11..143 665 100 Plus
X 23542271 X 6682225..6682412 150..334 230 76.1 Plus
2L 23513712 2L 10190847..10190998 478..327 190 75 Minus
Blast to na_te.dros performed on 2014-11-27 00:26:33 has no hits.

UFO09944.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:30 Download gff for UFO09944.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 133..1220 1..1080 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:57 Download gff for UFO09944.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 111..1198 1..1080 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:45 Download gff for UFO09944.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0255-RB 111..1198 1..1080 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:45 Download gff for UFO09944.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6679817..6679957 1..143 98 -> Plus
X 6680298..6680498 144..344 100 -> Plus
X 6680568..6681311 345..1080 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:57 Download gff for UFO09944.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6573850..6573990 1..143 98 -> Plus
arm_X 6574331..6574531 144..344 100 -> Plus
arm_X 6574601..6575344 345..1080 97   Plus