UFO09944.5prime Sequence
1105 bp (1003 high quality bases) assembled on 2011-10-17
> UFO09944.5prime
CAGTCGACATGGCCTCCCAGGAGTTTCGCGTGGAGAGCGACACCTTTGGC
GAACTGAAGGTGCCCGCGGATAAGTACTATGGCGCCCAAACGATGCGATC
CCAGATCAATTTCCCCATCGGCGGAGCCACCGAACGGATGCCCAAACCCG
TGGTCCAGGCCATGGGCATCCTGAAGAAGGCCGCCGCCGAGGTGAACAAG
GAGTTCGGACTGGACAGCAAGGTTAGCGAGGCGATCTCGAAGGCGGCCGA
CGATGTGATCTCTGGCAAGCTATACGACGACCACTTCCCGCTGGTCATCT
GGCAGACGGGCTCGGGCACGCAGAGCAACATGAATGTGAATGAGGTGATC
AGCAATCGTGCCATTGAGCTGCTGGGCGGCAAACTGGGCTCCAAGACGCC
CGTGCATCCCAACGATCATGTGAACAAATCGCAGAGCTCCAACGATACCT
TCCCCACCGCCATTCACATCTCGGTGGCGCTGGAGCTGAACAACAACCTT
AAGCCGGCGATTAAGACGCTGCACGATGCGCTGCGTGCCAAGTCGGAGGA
GTTCAAGGACATTATCAAGATCGGACGCACGCATACGATGGATGCGGTGC
CATTGACGCTGGGCCAAGAGTTCAGCGGCTATGCCCAGCAATTGGCCTAC
GCCCAGGAGCGCATCGATGCCTGTCTGCCGCGCGTCTATGAGCTGGCTCT
GGGCGGCACTGCTGTGGGTACGGGTCTGAACACACGCAAGGGATTCGCCG
AGAAGTGCGCTGCAAAGATCGCCGAGCTGACCAGCCTGCCCTTCGTTACC
GCGCCCAACAAGTTCGAGGCACTGGCTGCCCGCGATGCCATGGTGGAGTG
CATGGTGTGCTCAACACGATCGCCGTTAGCCTGATGAAGATTGCCAACGA
TATTCGTTTCCTTGGCTCAGACCGCGTTGCGGTTTGGGTGAGCTCTCGCT
ACGGAGACGAGCCAGGTAGCTCCATCATGCCGGGCAGTGAATCCCACGCA
ATGGCGAGTCGCTGAAAATGCTCTCCGCCAGGTGATGGGCAATCAAGGGG
GCGGTGACATCGTGGATCAATGGGAACCTCCGAGCTGATTTATTCAAGCC
TGAAT
UFO09944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0255-RB | 1668 | CG4094-RB | 119..1218 | 9..1100 | 5070 | 98.1 | Plus |
l(1)G0255-RA | 1740 | CG4094-RA | 192..1290 | 10..1100 | 5065 | 98.1 | Plus |
CG4095-RA | 1647 | CG4095-RA | 191..1235 | 22..1058 | 1985 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6680566..6681274 | 343..1045 | 3140 | 98.5 | Plus |
X | 23542271 | X | 6682504..6683170 | 343..1003 | 1435 | 82.8 | Plus |
X | 23542271 | X | 6680298..6680501 | 144..347 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 11464286..11465081 | 944..154 | 1010 | 76 | Minus |
X | 23542271 | X | 6679825..6679957 | 11..143 | 665 | 100 | Plus |
X | 23542271 | X | 6682225..6682412 | 150..334 | 230 | 76.1 | Plus |
2L | 23513712 | 2L | 10190847..10190998 | 478..327 | 190 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:26:33 has no hits.
UFO09944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:30 Download gff for
UFO09944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0255-RB | 133..1220 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:57 Download gff for
UFO09944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0255-RB | 111..1198 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:45 Download gff for
UFO09944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0255-RB | 111..1198 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:45 Download gff for
UFO09944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6679817..6679957 | 1..143 | 98 | -> | Plus |
X | 6680298..6680498 | 144..344 | 100 | -> | Plus |
X | 6680568..6681311 | 345..1080 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:57 Download gff for
UFO09944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6573850..6573990 | 1..143 | 98 | -> | Plus |
arm_X | 6574331..6574531 | 144..344 | 100 | -> | Plus |
arm_X | 6574601..6575344 | 345..1080 | 97 | | Plus |