UFO09946.5prime Sequence
1113 bp (997 high quality bases) assembled on 2011-10-17
> UFO09946.5prime
CAGTCGACATGAGATCGATTGCCACCAACTCCCTGCTGCCACTGATTGTG
GCCTTGCTGATCGCCGGTAGTAATGCCTCCCTCCCACGCAGGGGCAGCAG
AAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTTCAAGGTCC
TGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGCTGAAGGAG
AACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGGGCGGAGCT
GCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGGACACGAAC
CCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGAAATCCATC
TCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAGGTAAAGAG
ACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACACCGCCGTGG
CCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTTTTCACGAG
GGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCATCTTAACTG
GCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTACGGCTTTG
GAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCGACATTGAC
AAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATCGAGGAGGA
GTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGAGAGTGACT
TCGTAGTGATCGCTTCTCCTTTGACGAAAGACACACAGGGCGTCTTTAAT
GCCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGCTGGTTAACATTGC
CAGGGCAAAATCGTCAACCAGGATGACCTCTACGAGGCTTTGAAAGCCAA
CCGAATCTTTTTCCGCCGGACTCGACGTCACGGATCCGGAACCATTGTCG
CCCAAGGACAAGCTGCTGACGCTTGACATGTGTGTCTGCCATATTGGATT
CGCACGAAGCGCACCCGTGCGACATGTCACATGCTGCCCATATGTGGCTT
CGCGGATTGGCTGGGGAGCCCATGTGTTGTCCCGCTACGCAGACCTTCTA
GAACATCCTTTGG
UFO09946.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RL | 1346 | CG9331-RL | 138..1220 | 4..1075 | 4985 | 98.2 | Plus |
| CG9331-RG | 1369 | CG9331-RG | 161..1243 | 4..1075 | 4985 | 98.2 | Plus |
| CG9331-RA | 1244 | CG9331-RA | 36..1118 | 4..1075 | 4985 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825571..20826087 | 4..520 | 2570 | 99.8 | Plus |
| 2L | 23513712 | 2L | 20826633..20826967 | 521..855 | 1660 | 99.7 | Plus |
| 2L | 23513712 | 2L | 20827032..20827151 | 858..978 | 555 | 99.2 | Plus |
| 2L | 23513712 | 2L | 20831946..20832284 | 517..855 | 540 | 77.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:25:03 has no hits.
UFO09946.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:24 Download gff for
UFO09946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RG | 157..1255 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:14 Download gff for
UFO09946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RA | 34..1132 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:12 Download gff for
UFO09946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RA | 34..1132 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:12 Download gff for
UFO09946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20825569..20826087 | 1..520 | 99 | -> | Plus |
| 2L | 20826633..20826970 | 521..857 | 99 | -> | Plus |
| 2L | 20827032..20827157 | 858..984 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:14 Download gff for
UFO09946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825569..20826087 | 1..520 | 99 | -> | Plus |
| arm_2L | 20826633..20826970 | 521..857 | 99 | -> | Plus |
| arm_2L | 20827032..20827157 | 858..984 | 97 | -> | Plus |
