UFO09948.5prime Sequence
1107 bp (993 high quality bases) assembled on 2011-10-17
> UFO09948.5prime
CAGTCGACATGCTGCGCAAAACACCAAAACCTGCAATTTGGAAATTCATC
AAAGGAAGTGCCAAAACACTGTTTGTCCTCGAGGCAGTCTGCTTCGCAGC
CAGCTACGGCGTTTATTATCGCATGAACACGAATCGAGAGTTTCGTCAGC
ATATTCACGAGAACTATCCCTTCGTTTTGGACTATTACTACAAAATTGGT
GAAATCGTCGGAGACAGCACAGTGCGACAGGCGGATGCGAGTTATTGGAG
TGCTTTGAAGAAAAGCGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGT
GAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAAC
TGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATA
AACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTG
CGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGA
GCGATGAAACGTTTCAGTTTGCTCATGGAAACGTGTAACAAGGTGAACAC
TATCCCATATCACCAGCTCACGTCTTTCATTGCCATACGAAATTCCGGAT
GAGCATTCATCAGCGGCAAGAATGTGAATAAGGCGATAAAACTGTGCTTA
TTTTTCTTACGTCTTTCGAAAGCGTATATCAGCTGACGGTCTGTATAGTA
CATTGAGCACTGACTGAATGCCTCAATGTCTTACAGATGCATGGATATAT
CCACGGT
UFO09948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42371-RA | 691 | CG42371-RA | 105..365 | 9..269 | 1305 | 100 | Plus |
| CG15386-RA | 691 | CG15386-RA | 105..365 | 9..269 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2216829..2216961 | 269..137 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 2217013..2217142 | 138..9 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:25:19 has no hits.
UFO09948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:25 Download gff for
UFO09948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15386-RA | 82..350 | 1..269 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:22 Download gff for
UFO09948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15386-RA | 97..365 | 1..269 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:18 Download gff for
UFO09948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15386-RA | 97..365 | 1..269 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:18 Download gff for
UFO09948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2216829..2216959 | 139..269 | 100 | <- | Minus |
| 2L | 2217013..2217150 | 1..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:22 Download gff for
UFO09948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2216829..2216959 | 139..269 | 100 | <- | Minus |
| arm_2L | 2217013..2217150 | 1..138 | 97 | | Minus |
