UFO09950.5prime Sequence
1113 bp (977 high quality bases) assembled on 2011-10-17
> UFO09950.5prime
CAGTCGACATGCCCTTGGAAGAGAAGGAAGTTGAGTACTTTTTCGCATCG
GACGCCTCAGCCGTCATAGAGCACACTAACCGGGTCATCTATTTGGAGGA
CGACGATGTTGCTGCTGTTCGGGATGGAACTTTGAGTATACATCGCCTAA
AGAAGAGCCTGGATGATCCGCACGCTCGCGAAATCACTACCCTAAAAATG
GAAATTCAACAGATCATGAAGGGAAACTATGACTATTTTATGCAAAAGGA
GATTTTCGAGCAGCCCGACTCCGTGGTGAACACAATGCGCGGTCGCGTCC
GCTTCGATGGTAACGCCATAGTGCTCGGCGGGATCAAAGACTACATTCCT
GAAATCAAACGCTGTCGACGCCTGATGTTGATTGGATGTGGCACATCTTA
CCACAGCGCTGTAGCCACTAGGCAGCTGCTCGAAGAACTCACAGAGCTTC
CCGTGATGGTTGAGCTGGCTTCCGACTTTTTAGACCGAAACACTCCTATT
TTTCGAGACGACGTCTGCTTTTTTATATCGCAGTCCGGAGAGACTGCCGA
CACCCTGATGGCCTTACGTTACTGTAAGCAGCGAGGAGCCCTGATTGTGG
GCATTACGAATACCGTAGGCAGCAGCATATGTCGGGAATCGCATTGTGGA
GTGCACATTAATGCCGGACCAGAGATAGGCGTGGCCTCGACCAAGGCATA
CACCTCCCAATTCATTTCCCTGGTGATGTTCGCTCTAGTTATGTCCGAAG
ATCGACTGTCACTGCAACAGCGACGGCTTGAGATTCTGCAGGCGTTGTCA
AAGCTCGCGGATCAAATCCGAGACGTTCTGCAGCTGGACTCCAAAGTTAA
AGAACTGGGCCAAAGACCTATACCAACACAAGTCGCTTCTGATAATGGGT
AGGGGCTACAACTTTGCTACTTGCCTAGAATGTGCATTGAAAGTCAAAGA
GTTGACTTACATGCACAGCGAGGGCATCATGGCCGGTGATTGAAGCACGG
CCCACTGCTCTCGTAAACGACTCATGCCGGTGCTGATGAATTGTTTGCGG
ACCTCGGATTACGTAAGTGCATGGAACGCCTCTACGCAGTCCATTCTGCA
AGGATGCCGATTT
UFO09950.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat1-RH | 2601 | CG12449-RH | 1109..2213 | 9..1108 | 5040 | 97.8 | Plus |
| Gfat1-RD | 2363 | CG12449-RD | 871..1975 | 9..1108 | 5040 | 97.8 | Plus |
| Gfat1-RF | 2290 | CG12449-RF | 798..1902 | 9..1108 | 5040 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4136419..4137260 | 97..939 | 4120 | 99.5 | Plus |
| 3R | 32079331 | 3R | 28338036..28338787 | 772..24 | 1235 | 77.9 | Minus |
| 3R | 32079331 | 3R | 4135292..4135382 | 9..99 | 455 | 100 | Plus |
| 3R | 32079331 | 3R | 4137319..4137449 | 939..1066 | 355 | 90.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:27:22 has no hits.
UFO09950.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:33 Download gff for
UFO09950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RL | 891..1955 | 2..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:22 Download gff for
UFO09950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RF | 793..1857 | 2..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:11 Download gff for
UFO09950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RF | 793..1857 | 2..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:11 Download gff for
UFO09950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4135287..4135381 | 2..98 | 95 | -> | Plus |
| 3R | 4136421..4137260 | 99..939 | 99 | -> | Plus |
| 3R | 4137320..4137449 | 940..1066 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:22 Download gff for
UFO09950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 2479053..2479147 | 2..98 | 95 | -> | Plus |
| 3RHet | 2480187..2481026 | 99..939 | 99 | -> | Plus |
| 3RHet | 2481086..2481215 | 940..1066 | 91 | | Plus |
