UFO09951.5prime Sequence
1102 bp (974 high quality bases) assembled on 2011-10-17
> UFO09951.5prime
CAGTCGACATGCAGCAAGTCGATGAAAATCTGAAGAAGAAGCGTACCTTC
AAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTTCTGGACATGCC
CAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCGCAGGCGTTTCT
CCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGAAGCTGCGCAAG
GCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATTGTCAAGACCCA
CCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTCCATCATTGGCG
TCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGCCCGAGATGATC
GGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCCGTCAAGCACGG
TCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCATTCCTCTGAAGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAGT
TGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGA
TTGGCTGAGACGAAAAACATATTTCTCAATAAACCCTTTAGGGAAATAGC
CAGGTTTCACCGTACACCGCCACCATTCTGCGATATATGTGTAGAAACTG
CAGAATCGTCTGCTATTCACTCCGAAGCGATGAAAACGGTTCAGGTCGCT
CATGAAACGTGTACCAGGGTGAACCTATCATATCACAGGCTCACCGCTCT
CA
UFO09951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15-RB | 726 | CG8332-RB | 220..660 | 9..449 | 2205 | 100 | Plus |
| RpS15-RA | 627 | CG8332-RA | 43..477 | 15..449 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16570624..16570848 | 328..104 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 16570262..16570388 | 449..323 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 16570917..16571011 | 103..9 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:27:31 has no hits.
UFO09951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:34 Download gff for
UFO09951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15-RB | 188..640 | 4..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:30 Download gff for
UFO09951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15-RB | 213..665 | 4..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:16 Download gff for
UFO09951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15-RB | 213..665 | 4..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:16 Download gff for
UFO09951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16570262..16570384 | 327..449 | 100 | <- | Minus |
| 2R | 16570626..16570848 | 104..326 | 100 | <- | Minus |
| 2R | 16570917..16571014 | 4..103 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:30 Download gff for
UFO09951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12457767..12457889 | 327..449 | 100 | <- | Minus |
| arm_2R | 12458131..12458353 | 104..326 | 100 | <- | Minus |
| arm_2R | 12458422..12458519 | 4..103 | 97 | | Minus |
