Clone UFO09952 Report

Search the DGRC for UFO09952

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:99
Well:52
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG9410-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO09952.5prime Sequence

1091 bp (979 high quality bases) assembled on 2011-10-17

> UFO09952.5prime
CAGTCGACATGCTAAAGGGTAGCACACTGAAAGCCCTGGACGTCAGAATC
CTATGGCCCCTTATTGAAACAAGTGGAGGACACCAGCGCAGCTTCTCCAG
CAGCACCCACCGGTCCTACATAACATTCAATGATTTCCGCAAAAAACACC
GCTGGTACACAAAAAAGGAGCTTGTGGGCTACTCCATGCAGGACATGTAC
AGCGTGGTTTCCGACGTCAGCAATTACCACAAGTTCGTGCCGTATGTGAA
GCGCTCCGATGTGCACAGCCGGGGAAGTGAGGGCTTCAAGGCGGACCTCA
TTGTTGGCTTTCCGCCGCTTAACGAGGCCTACACCTCGCAGGTGACCCTG
GTGCCGCCCAGCTTGGTTAAGTCAGAGTGCCACGATGGACGTCTGTTCAA
CTACCTCCTGAATGAGTGGTCTTTTAAGCCGGGCCTCAAGGACATACCTA
ACTCCTGCGTGCTGGACTTCAAGGTATCGTTCGAGTTCAAGTCCCTCCTG
CACAGCAACGTCGCCAACATATTTTTTGACCTTATCTGCGATCAAATGGA
AAACGCTTTTATCCAGGAGGTCCGTCGACGGAGTGGTCCGCCCTCAATCC
GCTCCCACGTGCTTACTTCGGATCGGTCCGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGTCATTACTGGATCCTATCAACAGGAGTCCAAGCGAG
CTCGATTATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
CTGATCGCAGCGCATCAGCACCTTGTCGCTGCTATATATTGCCATGTGAA
ACGGGGCGAGAGTTGCATTTGCAGTATCACTGTATCCAGATGCTGACAAC
ATTCAAACTAGGATGCAGTCCGACCATGATTGGATCGACGT

UFO09952.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-RA 891 CG9410-RA 137..757 9..629 3105 100 Plus
CG9410-RE 833 CG9410-RE 71..699 9..629 3015 98.7 Plus
CG9410-RB 930 CG9410-RB 239..796 72..629 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6669491..6669942 178..629 2260 100 Plus
2R 25286936 2R 6669328..6669434 72..178 535 100 Plus
2R 25286936 2R 6669160..6669224 9..73 325 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:27:39 has no hits.

UFO09952.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:35 Download gff for UFO09952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9410-RD 583..647 9..73 100 -> Plus
CG9410-RD 753..1308 74..629 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:36 Download gff for UFO09952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9410-RA 137..757 9..629 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:18 Download gff for UFO09952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9410-RA 137..757 9..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:18 Download gff for UFO09952.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6669160..6669224 9..73 100 -> Plus
2R 6669330..6669434 74..178 100 -> Plus
2R 6669492..6669942 179..629 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:36 Download gff for UFO09952.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2556665..2556729 9..73 100 -> Plus
arm_2R 2556835..2556939 74..178 100 -> Plus
arm_2R 2556997..2557447 179..629 100 == Plus