UFO09952.5prime Sequence
1091 bp (979 high quality bases) assembled on 2011-10-17
> UFO09952.5prime
CAGTCGACATGCTAAAGGGTAGCACACTGAAAGCCCTGGACGTCAGAATC
CTATGGCCCCTTATTGAAACAAGTGGAGGACACCAGCGCAGCTTCTCCAG
CAGCACCCACCGGTCCTACATAACATTCAATGATTTCCGCAAAAAACACC
GCTGGTACACAAAAAAGGAGCTTGTGGGCTACTCCATGCAGGACATGTAC
AGCGTGGTTTCCGACGTCAGCAATTACCACAAGTTCGTGCCGTATGTGAA
GCGCTCCGATGTGCACAGCCGGGGAAGTGAGGGCTTCAAGGCGGACCTCA
TTGTTGGCTTTCCGCCGCTTAACGAGGCCTACACCTCGCAGGTGACCCTG
GTGCCGCCCAGCTTGGTTAAGTCAGAGTGCCACGATGGACGTCTGTTCAA
CTACCTCCTGAATGAGTGGTCTTTTAAGCCGGGCCTCAAGGACATACCTA
ACTCCTGCGTGCTGGACTTCAAGGTATCGTTCGAGTTCAAGTCCCTCCTG
CACAGCAACGTCGCCAACATATTTTTTGACCTTATCTGCGATCAAATGGA
AAACGCTTTTATCCAGGAGGTCCGTCGACGGAGTGGTCCGCCCTCAATCC
GCTCCCACGTGCTTACTTCGGATCGGTCCGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGTCATTACTGGATCCTATCAACAGGAGTCCAAGCGAG
CTCGATTATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
CTGATCGCAGCGCATCAGCACCTTGTCGCTGCTATATATTGCCATGTGAA
ACGGGGCGAGAGTTGCATTTGCAGTATCACTGTATCCAGATGCTGACAAC
ATTCAAACTAGGATGCAGTCCGACCATGATTGGATCGACGT
UFO09952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9410-RA | 891 | CG9410-RA | 137..757 | 9..629 | 3105 | 100 | Plus |
CG9410-RE | 833 | CG9410-RE | 71..699 | 9..629 | 3015 | 98.7 | Plus |
CG9410-RB | 930 | CG9410-RB | 239..796 | 72..629 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6669491..6669942 | 178..629 | 2260 | 100 | Plus |
2R | 25286936 | 2R | 6669328..6669434 | 72..178 | 535 | 100 | Plus |
2R | 25286936 | 2R | 6669160..6669224 | 9..73 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:27:39 has no hits.
UFO09952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:35 Download gff for
UFO09952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RD | 583..647 | 9..73 | 100 | -> | Plus |
CG9410-RD | 753..1308 | 74..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:36 Download gff for
UFO09952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RA | 137..757 | 9..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:18 Download gff for
UFO09952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RA | 137..757 | 9..629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:18 Download gff for
UFO09952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6669160..6669224 | 9..73 | 100 | -> | Plus |
2R | 6669330..6669434 | 74..178 | 100 | -> | Plus |
2R | 6669492..6669942 | 179..629 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:36 Download gff for
UFO09952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2556665..2556729 | 9..73 | 100 | -> | Plus |
arm_2R | 2556835..2556939 | 74..178 | 100 | -> | Plus |
arm_2R | 2556997..2557447 | 179..629 | 100 | == | Plus |