UFO09953.5prime Sequence
1099 bp (967 high quality bases) assembled on 2011-10-17
> UFO09953.5prime
CAGTCGACATGGTCTCTTTTTGTGCAACTCTGATTCGACAGTTTCGGCAC
AGGTCGGCAGCGGCATTTCAGATTGCGGAGTCCGCCATTTTAGCTAACAA
ATCTATAACCCTAGCTTCGTCAGCGTGCAGTGTGAATAGGGGTCAGTTGC
AGTTTGGAATTCAGATTGTTCGCGAATATTCGAAAGCGTCAAAGATGAGT
ACTTTGCCTAGGGTGTTTTTTGATATGACCGCCGACAACGAGCCCCTCGG
TCGGATCGTCATGGAGCTGCGCTCCGATGTCGTGCCCAAGACCGCCGAGA
ACTTCCGCGCCTTGTGCACCGGCGAGAAGGGATTCGGGTACAAGGGCTCC
ATTTTCCACCGCGTCATCCCCAACTTCATGTGCCAGGGCGGCGACTTCAC
CAACCACAACGGCACTGGCGGCAAGTCCATCTACGGCAACAAGTTCCCCG
ATGAGAACTTCGAGCTGAAGCACACCGGCTCCGGCATCCTGTCGATGGCC
AACGCTGGCGCCAACACGAACGGCTCCCAGTTCTTTATTTGCACTGTGAA
GACCGCCTGGTTGGACAACAAGCACGTCGTCTTCGGCGAGGTCGTCGAGG
GACTGGATGTGGTCAAGAAGATCGAATCTTATGGATCGCAGTCTGGCAAG
ACCTCCAAGAAGATCATTGTGGCTAACTCTGGTTCTCTTGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCGGGCGGCAACCGAGCGTTCT
GAACAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAAGGAG
TCCAAGCGAGCTCGATAATCAAATTACGCCCCGCCCCTGCCACTCATCGC
AGTACTGTTGGTAATTTCATTAAGCATTCTGCCGACATGGAGCTATCACA
AACGGCATGAATGAACCTGAATCGCCGCGGCATCAGCACTGTTGCTTGCG
TATAATTATTTGCCCATGGTGAAACGGGGGCGAAAAAGTGTCCATATGG
UFO09953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp1-RA | 1227 | CG9916-RA | 35..715 | 9..689 | 3405 | 100 | Plus |
| CG7768-RB | 679 | CG7768-RB | 151..551 | 261..661 | 745 | 79.4 | Plus |
| CG7768-RA | 717 | CG7768-RA | 189..589 | 261..661 | 745 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16318185..16318609 | 689..265 | 2125 | 100 | Minus |
| X | 23542271 | X | 16320079..16320336 | 266..9 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 14218446..14218846 | 261..661 | 745 | 79.1 | Plus |
| 2R | 25286936 | 2R | 17545994..17546154 | 378..538 | 370 | 82 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:27:47 has no hits.
UFO09953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:36 Download gff for
UFO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp1-RA | 69..761 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:40 Download gff for
UFO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp1-RA | 27..719 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:21 Download gff for
UFO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp1-RA | 27..719 | 1..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:21 Download gff for
UFO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16318181..16318607 | 267..694 | 99 | <- | Minus |
| X | 16320079..16320340 | 1..266 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:40 Download gff for
UFO09953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16212214..16212640 | 267..694 | 99 | <- | Minus |
| arm_X | 16214112..16214373 | 1..266 | 98 | | Minus |
