UFO09954.5prime Sequence
1084 bp (985 high quality bases) assembled on 2011-10-17
> UFO09954.5prime
CAGTCGACATGCTGCCGAGCCTGGATACCTTAATGCGTTGCTCGAAGCGA
GTTCTGCAATCGCCGCTGGAGGCGGCGGCCAGCCAGATGCGGAATGGGCA
CAGCAAGTCGGCCGCCGGGGGCATCTACGGCCCCTTTACGCCGGACAACG
ATCTCAGCTGCTCGGGACGGGGCGATTGCGTCAACAACACCTGCGTCTGC
GACATTCGGTACGCGGGCAACGAGTGCGACATCTTCAATCTGCCCTACTA
CGCCGGAATCTCCACCGTCTTCTACGTGGTGGCCCTCGTCTCGGTCATCC
AGCTGCTCATCTGCATCGTGGCCGAATATCAGCGGCTGAAGCAGCCCTCC
GTACTCCGCGCCTGTCGCATCACCACCCAGAAACTGCTCTACTTCATGGT
CTTTGTGGCGGCCTCGTTGCGAGGTGCCTACTTCACCACACCCCTGGATC
TGCAGCCACAATGGGCTGTCACCCTGATGTCCGCCTACTATCCATTGCTC
ATGACCTGCGCCTCGCTAATTGTCTGCATGTGGGCCGAGATCTTTCACCT
GCGCGACATCCGCTGGGAGAAGTCGCAGTTTCTGTCGAAGAGCTTCCTCG
GCTTCGTGGCCTTCAACTTCTTTCTGTACAGCCTGTTTGGCATAGAGGTC
TTCAACTCGCTGATCAACGCGGAGCGTCGCGACTACGCCCACATCTTCAA
CGGATGCTATGCAGTATTACTCCTGATCGTGGTGGTCTTCTTCCTCATCT
ACGGCGTGGAAGTGTTCTTTAAGCTGCGCGGCGGTTTCGTTTACGACCAG
ACGGGCAAGATTCTCGGTCCCAGCGAGGCAATTGTGAATGCCTCACAATT
GCATCAGTCGCGATTCGGACTGCTGTTTCAGCCGTGATGCTAATCGTGAA
TGTGGCTTTCTGACTTCCGAAACTTTGGCGACTTCTGGAAGACCAGTTCA
GTACTCGCCGCACTGGCATGACATCATTTTCGCATCGCGAGAATCGTGTG
CTCTCTGATCCTTGCTGCTTTGACTCGATGCTCCTGGACAGCTCTGATCT
AATCCTCGCAGCTCAATCGGCAATGATCGGTCAT
UFO09954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2991-RC | 2889 | CG2991-RC | 320..1391 | 9..1060 | 4750 | 97.4 | Plus |
| CG2991-RA | 3088 | CG2991-RA | 519..1590 | 9..1060 | 4750 | 97.4 | Plus |
| CG2991-RB | 2998 | CG2991-RB | 429..1500 | 9..1060 | 4750 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2864984..2865418 | 9..443 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 2866330..2866740 | 538..945 | 1890 | 99 | Plus |
| 2L | 23513712 | 2L | 2865482..2865577 | 444..539 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:27:56 has no hits.
UFO09954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:36 Download gff for
UFO09954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2991-RC | 312..1327 | 1..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:45 Download gff for
UFO09954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2991-RB | 423..1438 | 1..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:25 Download gff for
UFO09954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2991-RB | 423..1438 | 1..1007 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:25 Download gff for
UFO09954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2866827..2866852 | 955..980 | 92 | == | Plus |
| 2L | 2864978..2865418 | 1..443 | 99 | -> | Plus |
| 2L | 2865482..2865577 | 444..539 | 100 | -> | Plus |
| 2L | 2866332..2866752 | 540..954 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:45 Download gff for
UFO09954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2865482..2865577 | 444..539 | 100 | -> | Plus |
| arm_2L | 2864978..2865418 | 1..443 | 99 | -> | Plus |
| arm_2L | 2866332..2866752 | 540..954 | 97 | <- | Plus |
| arm_2L | 2866827..2866852 | 955..980 | 92 | == | Plus |
