UFO09955.5prime Sequence
1105 bp (957 high quality bases) assembled on 2011-10-17
> UFO09955.5prime
CAGTCGACATGAGCCAGATGACCCAGAAAACGGTGCAATTCCACGAGCTG
GAGCTGGATCAGCGCATCCTTAAGGCGGTGGCCCAGCTGGGTTGGCAGCA
GCCCACACTTATCCAGTCGACGGCGATACCGCTGCTTCTGGAGGGCAAGG
ATGTGGTGGTGCGCGCCCGCACCGGATCCGGCAAGACTGCCACCTACGCC
CTGCCACTGATTCAGAAGATCCTTAACTCCAAACTGAACGCCAGCGAGCA
GTATGTGAGCGCTGTGGTCCTGGCGCCCACCAAGGAGCTATGCCGGCAGT
CCCGTAAGGTGATCGAGCAGCTGGTCGAGTCCTGCGGCAAGGTTGTACGC
GTGGCGGACATTGCCGATAGCTCCAACGACACGGTGACCCAGCGGCACGC
CTTGTCTGAAAGTCCCGACATTGTGGTTGCCACACCCGCCAATTTGCTGG
CCTACGCCGAGGCTGGTAGCGTGGTGGATCTGAAGCATGTGGAGACCTTG
GTGGTGGACGAGGCGGATCTGGTGTTTGCCTATGGCTACGAAAAGGACTT
CAAGCGGTTGATTAAGCACCTGCCTCCCATCTACCAGGCTGTCCTAGTCT
CCGCTACTCTAACCGACGATGTGGTGCGCATGAAAAGGCCTGTGCCTGAA
CAACCCGGTTACGCTTAAACTCGAGGAGCCGGAGTTGGTGCCGCAAGATC
AGTTGTCGCACCAGCGCATTCTGGCTGAGGAAAACGATAAACCGGCTATC
TTGTACGCCTTATTGAAGCTGAGACTCATACGCGGCAAGAGCATAATCTT
TGTGAACAGCATCGATCGGTGTTACAAGGTTCGATTGTTCCTAGAGCAGT
TCGGCATCCGTGCCTGTGTCTTGAACTCCGAGCTGCCTGCCCACATTCGC
ATCCACACAATTAGCCAGTTCAACAGGGCAACTACGACATATTCATTGCC
TCCGACGACATCATAATGGAAAGCCAGGAAGCAAATCAGCGACTAACGAA
ATCTCCCTCGATGCGCCGACTGGAGTCGGTGCTCCCGCGCCATGAACTTC
ATGCGTGACACGTAATCAACTTCGACCTCCAGAATGTCACGTCTTAATCC
ATCCG
UFO09955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hlc-RB | 1963 | CG1666-RB | 95..1203 | 8..1103 | 4930 | 97.3 | Plus |
| Hlc-RA | 2116 | CG1666-RA | 95..1203 | 8..1103 | 4930 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21386973..21387735 | 828..65 | 3740 | 99.6 | Minus |
| X | 23542271 | X | 21386607..21386786 | 997..820 | 665 | 93.9 | Minus |
| X | 23542271 | X | 21387785..21387852 | 75..8 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:28:04 has no hits.
UFO09955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:37 Download gff for
UFO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hlc-RA | 82..1079 | 1..997 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:50 Download gff for
UFO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hlc-RA | 88..1085 | 1..997 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:29 Download gff for
UFO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hlc-RA | 88..1085 | 1..997 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:29 Download gff for
UFO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21386607..21386778 | 828..997 | 95 | <- | Minus |
| X | 21386974..21387725 | 75..827 | 99 | <- | Minus |
| X | 21387786..21387855 | 1..74 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:50 Download gff for
UFO09955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21257634..21257805 | 828..997 | 95 | <- | Minus |
| arm_X | 21258001..21258752 | 75..827 | 99 | <- | Minus |
| arm_X | 21258813..21258882 | 1..74 | 94 | | Minus |
