UFO09959.5prime Sequence
1124 bp (991 high quality bases) assembled on 2011-10-17
> UFO09959.5prime
CAGTCGACATGAGCAAGGAAATCCGTTTGGCCACCGTCAACGAACACAAC
AAAGCCACGGATCTGTGGGTGGTCATCGACAACAAGGTCTACGATGTGAC
CAAGTTCCGTCTCGAGCATCCCGGTGGCGAGGAATCCCTGGTGGATGAGG
CCGGTCGCGATGCCACCAAGGCCTTCAATGACGTGGGTCACAGCTCGGAG
GCGAGAGAGATGTTGAAGAAATACTACATTGGTGACCTGGCTGCTGCGGA
CATCAAGAAGAAAAGCCCAATTAGGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCAC
TCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAG
GGTGAACACTATCCCATATCACCAGCTCACCGTTCTTTCATTGCCATACG
AAATTCCGGATGAGCATCATCAGGCGGGCAAGAATGTGAATAAAGCCGTA
TAAACCTTGTGCTTATTTTTTCTTACGGTCTTTAAAAGCCGTACATCCAG
CTGACCGTCTGTTATAAGTACATGAACAACCTGTACTGAATGCTCAATGT
TCTTACGATGCCATGTATATCACG
UFO09959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3566-RC | 1607 | CG3566-RC | 86..352 | 9..275 | 1335 | 100 | Plus |
| CG3566-RD | 770 | CG3566-RD | 86..351 | 9..274 | 1330 | 100 | Plus |
| CG3566-RB | 550 | CG3566-RB | 86..351 | 9..274 | 1330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6276532..6276639 | 116..9 | 540 | 100 | Minus |
| X | 23542271 | X | 6276370..6276465 | 205..110 | 465 | 99 | Minus |
| X | 23542271 | X | 6276227..6276298 | 275..204 | 360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 844..901 | 127 | 72.9 | Plus |
UFO09959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:31 Download gff for
UFO09959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3566-RC | 32..306 | 1..275 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:08 Download gff for
UFO09959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3566-RC | 78..352 | 1..275 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:58 Download gff for
UFO09959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3566-RC | 78..352 | 1..275 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:58 Download gff for
UFO09959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6276227..6276296 | 206..275 | 100 | <- | Minus |
| X | 6276370..6276458 | 117..205 | 100 | <- | Minus |
| X | 6276532..6276647 | 1..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:08 Download gff for
UFO09959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6170260..6170329 | 206..275 | 100 | <- | Minus |
| arm_X | 6170403..6170491 | 117..205 | 100 | <- | Minus |
| arm_X | 6170565..6170680 | 1..116 | 97 | | Minus |
